The 2.0 version of rSNPBase

Variant report

Variant rs8119828
Chromosome Location chr20:16537006-16537007
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16509200-16553000 Weak transcription Primary T cells from cord blood blood
2 chr20:16511600-16549000 Weak transcription Colonic Mucosa Colon
3 chr20:16533800-16537600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr20:16533800-16538400 Enhancers NHEK skin
5 chr20:16534200-16537600 Enhancers Adipose Nuclei Adipose
6 chr20:16534200-16537600 Enhancers Esophagus oesophagus
7 chr20:16534200-16538200 Weak transcription Brain Anterior Caudate brain
8 chr20:16534600-16538400 Weak transcription Brain Cingulate Gyrus brain
9 chr20:16534600-16553600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr20:16534800-16537400 Weak transcription Brain Substantia Nigra brain
11 chr20:16535000-16537600 Enhancers Psoas Muscle Psoas
12 chr20:16535200-16537400 Enhancers Fetal Muscle Leg muscle
13 chr20:16535200-16538400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
14 chr20:16535400-16537400 Enhancers Breast Myoepithelial Primary Cells Breast
15 chr20:16535400-16538400 Enhancers Right Atrium heart
16 chr20:16535600-16537400 Enhancers Skeletal Muscle Male skeletal muscle
17 chr20:16535800-16537400 Enhancers Skeletal Muscle Female skeletal muscle
18 chr20:16535800-16537600 Enhancers NHDF-Ad bronchial
19 chr20:16535800-16537800 Enhancers HMEC breast
20 chr20:16535800-16538800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr20:16535800-16539000 Weak transcription Fetal Intestine Small intestine
22 chr20:16536000-16537400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
23 chr20:16536000-16537600 Enhancers A549 lung
24 chr20:16536000-16538200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr20:16536000-16551400 Weak transcription Right Ventricle heart
26 chr20:16536200-16537200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr20:16536200-16537600 Enhancers Colon Smooth Muscle Colon
28 chr20:16536400-16537600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr20:16536400-16538400 Weak transcription Stomach Mucosa stomach
30 chr20:16536600-16537200 Enhancers Sigmoid Colon Sigmoid Colon
31 chr20:16536600-16537400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
32 chr20:16536600-16537400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
33 chr20:16536600-16537400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
34 chr20:16536600-16537400 Enhancers Ovary ovary
35 chr20:16536600-16537600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr20:16536600-16537600 Enhancers Osteobl bone
37 chr20:16536800-16537400 Enhancers Primary B cells from peripheral blood blood
38 chr20:16536800-16537400 Enhancers Aorta Aorta
39 chr20:16536800-16537400 Enhancers Gastric stomach
40 chr20:16536800-16537400 Enhancers Left Ventricle heart
41 chr20:16536800-16537400 Enhancers Lung lung
42 chr20:16536800-16537400 Enhancers Small Intestine intestine
43 chr20:16536800-16537600 Enhancers Muscle Satellite Cultured Cells --
44 chr20:16536800-16537600 Enhancers NHLF lung
45 chr20:16537000-16537200 Genic enhancers Stomach Smooth Muscle stomach
46 chr20:16537000-16537200 Enhancers Spleen Spleen
47 chr20:16537000-16537400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr20:16537000-16537400 Enhancers Pancreas Pancrea
49 chr20:16537000-16543600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr20:16537000-16548800 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015