Variant report

Variant	rs6080301
Chromosome Location	chr20:16535666-16535667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12479533	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12480324	0.82[EUR][1000 genomes]
rs17674942	0.82[EUR][1000 genomes]
rs17743285	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28763700	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6044111	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6044112	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6075067	0.82[EUR][1000 genomes]
rs6075068	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6075069	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6080285	0.87[EUR][1000 genomes]
rs6080286	0.82[EUR][1000 genomes]
rs6080288	0.83[EUR][1000 genomes]
rs6080293	0.82[EUR][1000 genomes]
rs6080295	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6080296	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6080297	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73101044	0.83[EUR][1000 genomes]
rs73101048	0.83[EUR][1000 genomes]
rs8119828	0.89[AFR][1000 genomes]
rs880800	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16508400-16536800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
3	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
4	chr20:16518200-16535800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr20:16522800-16536800	Weak transcription	Aorta	Aorta
6	chr20:16530200-16536400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr20:16530400-16536400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr20:16533000-16536000	Weak transcription	Fetal Kidney	kidney
9	chr20:16533200-16536600	Weak transcription	Ovary	ovary
10	chr20:16533400-16535800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr20:16533600-16536000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr20:16533800-16536000	Enhancers	Right Ventricle	heart
13	chr20:16533800-16537600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr20:16533800-16538400	Enhancers	NHEK	skin
15	chr20:16534000-16536000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr20:16534000-16536000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr20:16534200-16536800	Weak transcription	Small Intestine	intestine
18	chr20:16534200-16537600	Enhancers	Adipose Nuclei	Adipose
19	chr20:16534200-16537600	Enhancers	Esophagus	oesophagus
20	chr20:16534200-16538200	Weak transcription	Brain Anterior Caudate	brain
21	chr20:16534400-16535800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr20:16534400-16535800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr20:16534400-16535800	Enhancers	Gastric	stomach
24	chr20:16534400-16536200	Enhancers	Lung	lung
25	chr20:16534600-16535800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr20:16534600-16536000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr20:16534600-16538400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr20:16534600-16553600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr20:16534800-16535800	Weak transcription	HMEC	breast
30	chr20:16534800-16536200	Weak transcription	Brain Hippocampus Middle	brain
31	chr20:16534800-16536600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr20:16534800-16537400	Weak transcription	Brain Substantia Nigra	brain
33	chr20:16535000-16536000	Weak transcription	Stomach Mucosa	stomach
34	chr20:16535000-16537600	Enhancers	Psoas Muscle	Psoas
35	chr20:16535200-16536200	Weak transcription	Colon Smooth Muscle	Colon
36	chr20:16535200-16537400	Enhancers	Fetal Muscle Leg	muscle
37	chr20:16535200-16538400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr20:16535400-16535800	Enhancers	Left Ventricle	heart
39	chr20:16535400-16535800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr20:16535400-16536600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr20:16535400-16537000	Weak transcription	Spleen	Spleen
42	chr20:16535400-16537400	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr20:16535400-16538400	Enhancers	Right Atrium	heart
44	chr20:16535600-16535800	Strong transcription	Fetal Intestine Small	intestine
45	chr20:16535600-16535800	Enhancers	Fetal Muscle Trunk	muscle
46	chr20:16535600-16536600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr20:16535600-16537000	Weak transcription	Pancreas	Pancrea
48	chr20:16535600-16537400	Enhancers	Skeletal Muscle Male	skeletal muscle

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