Variant report
| Variant | rs12479533 |
|---|---|
| Chromosome Location | chr20:16537615-16537616 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:16509200-16553000 | Weak transcription | Primary T cells from cord blood | blood |
| 2 | chr20:16511600-16549000 | Weak transcription | Colonic Mucosa | Colon |
| 3 | chr20:16533800-16538400 | Enhancers | NHEK | skin |
| 4 | chr20:16534200-16538200 | Weak transcription | Brain Anterior Caudate | brain |
| 5 | chr20:16534600-16538400 | Weak transcription | Brain Cingulate Gyrus | brain |
| 6 | chr20:16534600-16553600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 7 | chr20:16535200-16538400 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 8 | chr20:16535400-16538400 | Enhancers | Right Atrium | heart |
| 9 | chr20:16535800-16537800 | Enhancers | HMEC | breast |
| 10 | chr20:16535800-16538800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 11 | chr20:16535800-16539000 | Weak transcription | Fetal Intestine Small | intestine |
| 12 | chr20:16536000-16538200 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 13 | chr20:16536000-16551400 | Weak transcription | Right Ventricle | heart |
| 14 | chr20:16536400-16538400 | Weak transcription | Stomach Mucosa | stomach |
| 15 | chr20:16537000-16543600 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 16 | chr20:16537000-16548800 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 17 | chr20:16537200-16549200 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 18 | chr20:16537200-16552000 | Weak transcription | Stomach Smooth Muscle | stomach |
| 19 | chr20:16537400-16538200 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 20 | chr20:16537400-16538800 | Weak transcription | Left Ventricle | heart |
| 21 | chr20:16537400-16538800 | Weak transcription | Lung | lung |
| 22 | chr20:16537400-16540800 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 23 | chr20:16537400-16545400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 24 | chr20:16537400-16545400 | Weak transcription | Pancreas | Pancrea |
| 25 | chr20:16537400-16550200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 26 | chr20:16537400-16551200 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 27 | chr20:16537400-16553400 | Weak transcription | Aorta | Aorta |
| 28 | chr20:16537600-16538000 | Weak transcription | Brain Substantia Nigra | brain |
| 29 | chr20:16537600-16541000 | Weak transcription | Osteobl | bone |
| 30 | chr20:16537600-16541200 | Weak transcription | Muscle Satellite Cultured Cells | -- |
| 31 | chr20:16537600-16543000 | Weak transcription | Psoas Muscle | Psoas |
| 32 | chr20:16537600-16543600 | Weak transcription | A549 | lung |
| 33 | chr20:16537600-16545400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 34 | chr20:16537600-16551400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 35 | chr20:16537600-16551400 | Weak transcription | Esophagus | oesophagus |
| 36 | chr20:16537600-16551800 | Weak transcription | Adipose Nuclei | Adipose |
