Variant report

Variant	rs880800
Chromosome Location	chr20:16528537-16528538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12479533	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12480324	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12481403	0.90[AMR][1000 genomes]
rs17674942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17743285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28763700	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6044078	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6044083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6044111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6044112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6044151	1.00[YRI][hapmap]
rs6075067	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6075068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6075069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6075076	0.90[AMR][1000 genomes]
rs6080285	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6080286	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6080288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6080293	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6080295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6080296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6080297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6080301	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73101044	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73101048	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7352372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16492600-16528800	Weak transcription	Primary B cells from cord blood	blood
2	chr20:16508400-16536800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
4	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
5	chr20:16517800-16534200	Weak transcription	Esophagus	oesophagus
6	chr20:16518200-16535800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr20:16518800-16534000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:16520200-16532000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr20:16520200-16534400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr20:16520400-16533800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr20:16520400-16534800	Weak transcription	Fetal Intestine Small	intestine
12	chr20:16522200-16533400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr20:16522800-16532400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr20:16522800-16533800	Weak transcription	Right Ventricle	heart
15	chr20:16522800-16536800	Weak transcription	Aorta	Aorta
16	chr20:16523000-16533800	Weak transcription	Brain Anterior Caudate	brain
17	chr20:16523400-16532600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr20:16523400-16535400	Weak transcription	Left Ventricle	heart
19	chr20:16523600-16528800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr20:16523800-16532400	Weak transcription	Ovary	ovary
21	chr20:16524000-16533800	Weak transcription	Small Intestine	intestine
22	chr20:16525600-16532000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr20:16528200-16528600	Enhancers	Gastric	stomach
24	chr20:16528200-16528600	Enhancers	Psoas Muscle	Psoas
25	chr20:16528200-16529000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr20:16528400-16528800	Weak transcription	Lung	lung
27	chr20:16528400-16528800	Enhancers	K562	blood
28	chr20:16528400-16529000	Weak transcription	Pancreas	Pancrea
29	chr20:16528400-16529000	Enhancers	Spleen	Spleen
30	chr20:16528400-16529200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr20:16528400-16529200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr20:16528400-16532400	Weak transcription	Brain Angular Gyrus	brain

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