Variant report

Variant	rs7352372
Chromosome Location	chr20:16511991-16511992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16510014..16512437-chr20:16553741..16556375,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089177	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12479533	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12480324	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17674942	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17743285	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6044078	0.90[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.83[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6044083	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6044099	0.88[MKK][hapmap]
rs6044111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6044112	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6075067	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6075068	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6075069	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6080285	0.97[ASN][1000 genomes]
rs6080286	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6080288	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6080293	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6080295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6080296	0.92[ASN][1000 genomes]
rs6080297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs73101044	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73101048	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs880800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16472800-16517400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr20:16485800-16521200	Weak transcription	Right Ventricle	heart
3	chr20:16489200-16512200	Weak transcription	Gastric	stomach
4	chr20:16489200-16521000	Weak transcription	Spleen	Spleen
5	chr20:16489400-16517600	Weak transcription	Pancreas	Pancrea
6	chr20:16492400-16517800	Weak transcription	Colon Smooth Muscle	Colon
7	chr20:16492600-16528800	Weak transcription	Primary B cells from cord blood	blood
8	chr20:16493000-16521200	Weak transcription	Liver	Liver
9	chr20:16493600-16516200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr20:16497600-16521600	Weak transcription	Brain Hippocampus Middle	brain
11	chr20:16506200-16517800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr20:16506400-16517400	Weak transcription	Adipose Nuclei	Adipose
13	chr20:16507400-16527000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr20:16507800-16512000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr20:16507800-16513800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr20:16508000-16522000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr20:16508200-16512200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr20:16508400-16512400	Enhancers	Fetal Intestine Small	intestine
19	chr20:16508400-16513000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr20:16508400-16536800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr20:16509000-16517400	Weak transcription	Left Ventricle	heart
22	chr20:16509000-16522000	Weak transcription	Aorta	Aorta
23	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
24	chr20:16509400-16517400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr20:16509600-16521600	Weak transcription	Fetal Muscle Leg	muscle
26	chr20:16509800-16517400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr20:16510400-16517400	Weak transcription	Small Intestine	intestine
28	chr20:16510600-16512400	Flanking Active TSS	A549	lung
29	chr20:16510800-16512200	Enhancers	Ovary	ovary
30	chr20:16511000-16512400	Enhancers	Esophagus	oesophagus
31	chr20:16511200-16512200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr20:16511200-16512200	Weak transcription	Psoas Muscle	Psoas
33	chr20:16511200-16518400	Weak transcription	NHEK	skin
34	chr20:16511400-16512000	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr20:16511400-16518600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr20:16511400-16519600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr20:16511400-16519800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr20:16511600-16512400	Enhancers	Hela-S3	cervix
39	chr20:16511600-16513000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr20:16511600-16517600	Weak transcription	Stomach Mucosa	stomach
41	chr20:16511600-16522400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
43	chr20:16511800-16513400	Weak transcription	Fetal Intestine Large	intestine
44	chr20:16511800-16517400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr20:16511800-16518000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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