Variant report

Variant	rs8121996
Chromosome Location	chr20:41370934-41370935
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2206433	1.00[EUR][1000 genomes]
rs2425510	1.00[EUR][1000 genomes]
rs2425517	1.00[EUR][1000 genomes]
rs2425518	1.00[EUR][1000 genomes]
rs3091641	1.00[EUR][1000 genomes]
rs3092316	1.00[EUR][1000 genomes]
rs3092338	1.00[EUR][1000 genomes]
rs3092355	1.00[EUR][1000 genomes]
rs3092591	1.00[EUR][1000 genomes]
rs3092692	1.00[EUR][1000 genomes]
rs57912123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73269855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73907250	1.00[EUR][1000 genomes]
rs73907251	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv833988	chr20:41227788-41379921	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv586028	chr20:41296994-41381215	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41369800-41374800	Weak transcription	Fetal Brain Female	brain
2	chr20:41369800-41378600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr20:41370200-41377000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr20:41370400-41371400	Weak transcription	Fetal Brain Male	brain
5	chr20:41370800-41371600	Enhancers	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links