Variant report

Variant	rs8130025
Chromosome Location	chr21:41527029-41527030
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2297266	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36043003	0.83[EUR][1000 genomes]
rs9305691	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9982079	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9982099	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs8130025	B3GALT5	cis	cerebellum	SCAN
rs8130025	MX2	cis	cerebellum	SCAN
rs8130025	ZNF295	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41517200-41528800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr21:41525400-41534000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr21:41526400-41527400	Enhancers	Fetal Brain Female	brain
4	chr21:41526400-41527800	Enhancers	Fetal Muscle Leg	muscle
5	chr21:41527000-41528000	Enhancers	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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