Variant report

Variant	rs9305691
Chromosome Location	chr21:41528198-41528199
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1474494	0.83[JPT][hapmap]
rs2837463	0.83[AMR][1000 genomes]
rs36043003	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8130025	0.87[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9982079	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9982099	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9305691	B3GALT5	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41517200-41528800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr21:41525400-41534000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr21:41527400-41566400	Weak transcription	Fetal Brain Female	brain
4	chr21:41527800-41528800	Weak transcription	Fetal Muscle Leg	muscle
5	chr21:41528000-41529600	Weak transcription	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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