Variant report

Variant	rs8136547
Chromosome Location	chr22:28374578-28374579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:28373494..28375523-chr22:28377881..28379772,3	MCF-7	breast:
2	chr22:28371840..28377290-chr22:28378156..28383171,5	K562	blood:
3	chr22:28373482..28376187-chr22:28381012..28382815,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HSCB-1	chr22:28374423-28374695	NONHSAT084633

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2345011	1.00[YRI][hapmap]
rs7286067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7289482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8135697	1.00[YRI][hapmap]
rs8137204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8142924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8143058	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9754330	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28316400-28376800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr22:28316400-28378000	Weak transcription	Esophagus	oesophagus
3	chr22:28318800-28382000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr22:28319600-28383000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr22:28321400-28379000	Weak transcription	Primary B cells from cord blood	blood
6	chr22:28329400-28377800	Weak transcription	Primary T cells from cord blood	blood
7	chr22:28355400-28387800	Weak transcription	Fetal Brain Male	brain
8	chr22:28355600-28378000	Weak transcription	Gastric	stomach
9	chr22:28355800-28378000	Weak transcription	Aorta	Aorta
10	chr22:28355800-28378000	Weak transcription	Left Ventricle	heart
11	chr22:28356600-28378000	Weak transcription	Psoas Muscle	Psoas
12	chr22:28358600-28379400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr22:28359000-28377800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr22:28359200-28377800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr22:28360000-28379400	Weak transcription	Colonic Mucosa	Colon
16	chr22:28360200-28382800	Weak transcription	HSMM	muscle
17	chr22:28360800-28392400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr22:28362600-28375800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr22:28362800-28378000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr22:28363000-28377800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr22:28363800-28375000	Weak transcription	Lung	lung
22	chr22:28365200-28377600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr22:28366200-28378000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr22:28367600-28377800	Weak transcription	Colon Smooth Muscle	Colon
25	chr22:28367800-28377800	Weak transcription	Brain Anterior Caudate	brain
26	chr22:28368200-28376000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr22:28368400-28374600	Weak transcription	Adipose Nuclei	Adipose
28	chr22:28368400-28377800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr22:28368400-28383400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr22:28368600-28377600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr22:28368600-28377800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr22:28368800-28376800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr22:28368800-28377800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr22:28368800-28385800	Weak transcription	Brain Angular Gyrus	brain
35	chr22:28369000-28381200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr22:28369200-28398400	Weak transcription	Hela-S3	cervix
37	chr22:28369400-28378000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr22:28369400-28378000	Weak transcription	Liver	Liver
39	chr22:28369400-28378000	Weak transcription	NHLF	lung
40	chr22:28369400-28394000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr22:28369800-28377800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr22:28370200-28376000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr22:28370200-28378000	Weak transcription	Pancreas	Pancrea
44	chr22:28370400-28375800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr22:28370400-28375800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr22:28370400-28377800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr22:28370400-28378000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr22:28370400-28382400	Weak transcription	Stomach Mucosa	stomach
49	chr22:28370400-28387200	Weak transcription	Fetal Kidney	kidney
50	chr22:28370600-28376000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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