Variant report

Variant	rs8137204
Chromosome Location	chr22:28358642-28358643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs7286067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7289482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8136547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8142924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8143058	1.00[AMR][1000 genomes]
rs9754330	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28316400-28370200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr22:28316400-28376800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr22:28316400-28378000	Weak transcription	Esophagus	oesophagus
4	chr22:28318800-28382000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr22:28319600-28383000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr22:28321400-28379000	Weak transcription	Primary B cells from cord blood	blood
7	chr22:28322000-28365200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr22:28322000-28366200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr22:28326800-28368600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr22:28329400-28377800	Weak transcription	Primary T cells from cord blood	blood
11	chr22:28339400-28367800	Weak transcription	Fetal Intestine Small	intestine
12	chr22:28351000-28362200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr22:28353400-28369200	Weak transcription	Fetal Stomach	stomach
14	chr22:28354800-28360600	Enhancers	Liver	Liver
15	chr22:28355400-28387800	Weak transcription	Fetal Brain Male	brain
16	chr22:28355600-28366800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr22:28355600-28378000	Weak transcription	Gastric	stomach
18	chr22:28355800-28363600	Weak transcription	Lung	lung
19	chr22:28355800-28368600	Weak transcription	Pancreas	Pancrea
20	chr22:28355800-28371800	Weak transcription	Right Ventricle	heart
21	chr22:28355800-28378000	Weak transcription	Aorta	Aorta
22	chr22:28355800-28378000	Weak transcription	Left Ventricle	heart
23	chr22:28356400-28361800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr22:28356600-28361600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr22:28356600-28361800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr22:28356600-28365600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr22:28356600-28378000	Weak transcription	Psoas Muscle	Psoas
28	chr22:28356800-28361600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr22:28357000-28361400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr22:28357000-28362200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr22:28357400-28359000	Enhancers	Fetal Lung	lung
32	chr22:28357600-28360400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr22:28357600-28361400	Weak transcription	HepG2	liver
34	chr22:28358000-28359000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr22:28358000-28360000	Enhancers	Brain Germinal Matrix	brain
36	chr22:28358200-28358800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr22:28358200-28359000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr22:28358200-28359000	Enhancers	Brain Anterior Caudate	brain
39	chr22:28358200-28359000	Enhancers	Fetal Heart	heart
40	chr22:28358200-28359000	Enhancers	NHLF	lung
41	chr22:28358200-28359400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr22:28358400-28359000	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr22:28358400-28359000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr22:28358400-28359000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr22:28358400-28359000	Enhancers	Brain Angular Gyrus	brain
46	chr22:28358400-28359000	Enhancers	Brain Cingulate Gyrus	brain
47	chr22:28358400-28359000	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr22:28358400-28359000	Enhancers	Duodenum Mucosa	Duodenum
49	chr22:28358400-28359000	Enhancers	Ovary	ovary
50	chr22:28358400-28359000	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links