Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98540353..98542848-chr9:98564326..98568031,3	MCF-7	breast:
2	chr9:98566028..98568952-chr9:98582785..98584307,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10121403	0.86[ASN][1000 genomes]
rs10481647	0.86[ASN][1000 genomes]
rs10739632	0.86[ASN][1000 genomes]
rs10760675	0.85[ASN][1000 genomes]
rs10818017	0.94[ASN][1000 genomes]
rs10983622	0.93[ASN][1000 genomes]
rs10983692	0.94[ASN][1000 genomes]
rs10983739	0.96[ASN][1000 genomes]
rs10983773	0.97[ASN][1000 genomes]
rs10983818	0.97[ASN][1000 genomes]
rs12004422	0.86[ASN][1000 genomes]
rs12375861	0.94[ASN][1000 genomes]
rs12553442	0.85[ASN][1000 genomes]
rs1410783	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1928253	0.86[ASN][1000 genomes]
rs2117432	0.97[ASN][1000 genomes]
rs2164156	0.97[ASN][1000 genomes]
rs2164157	0.97[ASN][1000 genomes]
rs2770837	0.98[ASN][1000 genomes]
rs585223	0.81[ASN][1000 genomes]
rs591579	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs615866	0.85[ASN][1000 genomes]
rs631273	0.81[ASN][1000 genomes]
rs643815	0.85[ASN][1000 genomes]
rs6479036	0.81[ASN][1000 genomes]
rs680754	0.84[ASN][1000 genomes]
rs683829	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs689749	0.86[ASN][1000 genomes]
rs689871	0.85[ASN][1000 genomes]
rs689979	0.82[ASN][1000 genomes]
rs690222	0.85[ASN][1000 genomes]
rs690304	0.86[ASN][1000 genomes]
rs690335	0.85[ASN][1000 genomes]
rs690563	0.81[EUR][1000 genomes]
rs700963	0.99[ASN][1000 genomes]
rs7874897	0.85[ASN][1000 genomes]
rs816671	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816676	0.96[ASN][1000 genomes]
rs9409321	0.98[ASN][1000 genomes]
rs9409322	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98548400-98578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:98557400-98577200	Weak transcription	Pancreas	Pancrea
3	chr9:98564400-98568600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:98565000-98569400	Weak transcription	HUVEC	blood vessel

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