Variant report

Variant	rs8177623
Chromosome Location	chr10:6020874-6020875
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:6020123-6021010	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6018551..6021640-chr10:6130714..6134315,5	MCF-7	breast:
2	chr10:6018064..6021783-chr10:6129304..6132316,4	K562	blood:
3	chr10:6003571..6011080-chr10:6014794..6021269,11	K562	blood:
4	chr10:6020440..6022335-chr10:6023498..6026826,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FBXO18-2	chr10:6019377-6021681	NONHSAT011200

No data

Variant related genes	Relation type
IL15RA	TF binding region
ENSG00000134453	Chromatin interaction
ENSG00000134470	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7909436	1.00[AFR][1000 genomes]
rs8177622	1.00[AFR][1000 genomes]
rs8177707	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv894810	chr10:6015595-6023466	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv894811	chr10:6016399-6022562	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv894812	chr10:6016892-6022562	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv549908	chr10:6018225-6021547	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6017800-6021000	Active TSS	Right Atrium	heart
2	chr10:6018200-6021000	Active TSS	Psoas Muscle	Psoas
3	chr10:6018200-6021000	Active TSS	Right Ventricle	heart
4	chr10:6018800-6021200	Active TSS	Primary T cells from cord blood	blood
5	chr10:6020200-6021200	Active TSS	Stomach Smooth Muscle	stomach
6	chr10:6020200-6023200	Weak transcription	Spleen	Spleen
7	chr10:6020400-6022800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:6020400-6025800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:6020400-6029800	Weak transcription	Ovary	ovary
10	chr10:6020600-6021000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:6020600-6021400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:6020600-6021400	Enhancers	Liver	Liver
13	chr10:6020600-6022800	Weak transcription	K562	blood
14	chr10:6020800-6021000	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr10:6020800-6021000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr10:6020800-6022200	Weak transcription	Pancreas	Pancrea
17	chr10:6020800-6022400	Weak transcription	Lung	lung
18	chr10:6020800-6025600	Weak transcription	Duodenum Mucosa	Duodenum

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