Variant report

Variant	rs8179934
Chromosome Location	chr3:142816544-142816545
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142814191..142816604-chr3:142843060..142844617,2	K562	blood:
2	chr3:142805683..142809398-chr3:142813217..142818159,4	K562	blood:
3	chr3:142815403..142818636-chr3:142818743..142822345,3	K562	blood:
4	chr3:142814752..142820591-chr3:142836443..142840865,5	K562	blood:
5	chr3:142816543..142819154-chr3:142830617..142832847,2	K562	blood:

Variant related genes	Relation type
ENSG00000175040	Chromatin interaction
ENSG00000243733	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10804685	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11707027	0.82[EUR][1000 genomes]
rs11708528	0.89[EUR][1000 genomes]
rs11713025	0.83[EUR][1000 genomes]
rs12494086	0.82[EUR][1000 genomes]
rs16852921	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1979836	0.90[EUR][1000 genomes]
rs2280083	0.89[EUR][1000 genomes]
rs35746477	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3755740	0.82[EUR][1000 genomes]
rs3886152	0.81[EUR][1000 genomes]
rs4149494	0.89[EUR][1000 genomes]
rs4683445	0.82[EUR][1000 genomes]
rs4683725	0.83[EUR][1000 genomes]
rs4683727	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4683737	0.84[EUR][1000 genomes]
rs4683738	0.83[EUR][1000 genomes]
rs4683739	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6799460	0.84[EUR][1000 genomes]
rs750869	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs750870	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv591921	chr3:142762487-142841740	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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