Variant report

Variant	rs820494
Chromosome Location	chr9:6704237-6704238
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr9:6704095-6704279	MCF-7	breast:	n/a	n/a
2	YY1	chr9:6703807-6704465	A549	lung:	n/a	n/a
3	POLR2A	chr9:6703903-6704279	H1-hESC	embryonic stem cell:	n/a	n/a
4	JUND	chr9:6703995-6704482	A549	lung:	n/a	n/a
5	MAX	chr9:6704030-6704652	HUVEC	blood vessel:	n/a	n/a
6	CHD1	chr9:6703329-6704312	GM12878	blood:	n/a	n/a
7	TCF12	chr9:6703882-6704401	A549	lung:	n/a	chr9:6704183-6704190
8	STAT5A	chr9:6703816-6704689	GM12878	blood:	n/a	n/a
9	MAZ	chr9:6704194-6704390	HepG2	liver:	n/a	n/a
10	SPI1	chr9:6703916-6704242	GM12891	blood:	n/a	chr9:6704069-6704078 chr9:6704068-6704081 chr9:6704067-6704080 chr9:6704068-6704081
11	TAF1	chr9:6703943-6704630	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF3	chr9:6703937-6704598	GM12878	blood:	n/a	chr9:6703954-6703967 chr9:6704101-6704111
13	TBP	chr9:6703749-6704632	GM12878	blood:	n/a	n/a
14	POLR2A	chr9:6702970-6704788	PBDE	blood:	n/a	n/a
15	MAX	chr9:6703499-6704737	ECC-1	luminal epithelium:	n/a	n/a
16	POLR2A	chr9:6703997-6704517	A549	lung:	n/a	n/a
17	USF1	chr9:6703723-6704903	SK-N-SH	brain:	n/a	chr9:6704242-6704253 chr9:6704261-6704272
18	USF1	chr9:6703890-6704484	SK-N-SH_RA	brain:	n/a	chr9:6704242-6704253 chr9:6704261-6704272
19	ATF3	chr9:6704072-6704352	GM12878	blood:	n/a	chr9:6704101-6704111
20	POLR2A	chr9:6703463-6704608	GM12878	blood:	n/a	n/a
21	FOS	chr9:6704090-6704387	MCF10A-Er-Src	breast:	n/a	n/a
22	POLR2A	chr9:6703995-6704386	PANC-1	pancreas:	n/a	n/a
23	CHD2	chr9:6704025-6704690	GM12878	blood:	n/a	n/a
24	RELA	chr9:6703455-6704574	GM19099	blood:	n/a	n/a
25	EP300	chr9:6703972-6704544	A549	lung:	n/a	chr9:6704065-6704079
26	SPI1	chr9:6703777-6704455	HL-60	blood:	n/a	chr9:6704069-6704078 chr9:6704068-6704081 chr9:6704067-6704080 chr9:6704068-6704081
27	PBX3	chr9:6703905-6704626	A549	lung:	n/a	chr9:6704333-6704342
28	POLR2A	chr9:6703516-6704610	HL-60	blood:	n/a	n/a
29	BCLAF1	chr9:6703931-6704678	GM12878	blood:	n/a	n/a
30	REST	chr9:6704013-6704376	SK-N-SH	brain:	n/a	n/a
31	POLR2A	chr9:6703500-6704641	GM19099	blood:	n/a	n/a
32	SIN3AK20	chr9:6703932-6704504	A549	lung:	n/a	n/a
33	E2F6	chr9:6703446-6704991	H1-hESC	embryonic stem cell:	n/a	chr9:6704861-6704868 chr9:6704314-6704323
34	MAX	chr9:6703899-6704802	SK-N-SH	brain:	n/a	n/a
35	TAF1	chr9:6703906-6704676	H1-neurons	neurons:	n/a	n/a
36	RUNX3	chr9:6703564-6704729	GM12878	blood:	n/a	n/a
37	POLR2A	chr9:6703350-6704635	GM12892	blood:	n/a	n/a
38	TCF12	chr9:6704087-6704362	H1-hESC	embryonic stem cell:	n/a	chr9:6704183-6704190
39	POLR2A	chr9:6703890-6704516	GM12892	blood:	n/a	n/a
40	POLR2A	chr9:6703923-6704509	MCF10A-Er-Src	breast:	n/a	n/a
41	EP300	chr9:6703752-6704621	ECC-1	luminal epithelium:	n/a	chr9:6704065-6704079
42	MAX	chr9:6703893-6704730	HepG2	liver:	n/a	n/a
43	POLR2A	chr9:6703540-6704679	GM12878	blood:	n/a	n/a
44	ZBTB33	chr9:6704069-6704351	K562	blood:	n/a	n/a
45	POLR2A	chr9:6702928-6704618	GM12878	blood:	n/a	n/a
46	POLR2A	chr9:6703868-6704526	GM12878	blood:	n/a	n/a
47	TAF1	chr9:6704014-6704465	HepG2	liver:	n/a	n/a
48	GATA3	chr9:6703877-6704563	A549	lung:	n/a	n/a
49	POLR2A	chr9:6703995-6704490	SK-N-SH	brain:	n/a	n/a
50	MXI1	chr9:6702843-6704921	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:6702847..6705575-chr9:6714326..6717882,7	MCF-7	breast:
2	chr9:6702391..6705446-chr9:6756717..6760058,5	MCF-7	breast:
3	chr5:166256227..166256733-chr9:6703705..6704305,2	MCF-7	breast:
4	chr9:6683289..6684884-chr9:6702645..6704262,2	MCF-7	breast:
5	chr9:6690617..6692723-chr9:6701607..6704265,2	MCF-7	breast:
6	chr9:6698340..6700152-chr9:6701946..6704339,2	MCF-7	breast:
7	chr9:6702551..6705246-chr9:6715022..6717677,6	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDM4C-2	chr9:6704179-6704343	XLOC_007275

Variant related genes	Relation type
ENSG00000229611	TF binding region
ENSG00000107077	Chromatin interaction
ENSG00000225489	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs820495	0.83[AMR][1000 genomes]
rs820496	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:99 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892162	chr9:6480005-6788085	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv2752308	chr9:6523060-6899149	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
3	esv3324686	chr9:6528411-6728310	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
4	nsv1028402	chr9:6542253-6874231	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
5	nsv1018308	chr9:6544766-6869653	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
6	nsv1015462	chr9:6544766-6874231	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
7	nsv1018870	chr9:6548393-6708345	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
8	nsv870402	chr9:6565246-7016784	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
9	nsv1033539	chr9:6566610-7022554	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
10	nsv466111	chr9:6567841-7017391	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
11	nsv613208	chr9:6567841-7017391	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
12	nsv1029929	chr9:6573752-6852349	Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
13	nsv539969	chr9:6573752-6852349	Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
14	nsv1024831	chr9:6573752-7018641	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
15	nsv1034936	chr9:6575976-6708345	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
16	esv2758626	chr9:6576991-6838660	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
17	esv2759661	chr9:6576991-6845561	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
18	nsv1031417	chr9:6584138-6823129	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
19	nsv539970	chr9:6584138-6823129	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
20	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
21	nsv1018415	chr9:6605417-6723788	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
22	nsv1021933	chr9:6605417-6824468	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
23	nsv1018845	chr9:6609578-6829592	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
24	nsv1023706	chr9:6619819-6745551	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
25	nsv519777	chr9:6620059-6750556	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
26	nsv613209	chr9:6620059-6750556	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
27	nsv1021304	chr9:6630626-6767080	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
28	nsv1033323	chr9:6630626-6824468	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
29	nsv613210	chr9:6635045-6750556	Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
30	nsv892169	chr9:6641895-6715730	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
31	nsv892170	chr9:6641895-6723861	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
32	nsv1028863	chr9:6656619-6725007	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
33	nsv1034003	chr9:6663786-6745551	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
34	nsv613211	chr9:6664282-6706693	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
35	nsv1030278	chr9:6669375-6741529	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
36	nsv892173	chr9:6669474-6760919	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
37	nsv466112	chr9:6669474-6786734	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
38	nsv613212	chr9:6669474-6786734	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
39	esv2752309	chr9:6670448-6908200	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
40	nsv466113	chr9:6672097-6731786	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
41	nsv613213	chr9:6672097-6731786	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
42	nsv892175	chr9:6672097-6750556	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
43	nsv892176	chr9:6672097-6760919	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
44	nsv982630	chr9:6672217-6796787	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
45	nsv471273	chr9:6673465-6739489	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
46	nsv892177	chr9:6673465-6750556	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
47	nsv892178	chr9:6673957-6750556	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
48	nsv892179	chr9:6676953-6733456	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
49	nsv892180	chr9:6680477-6750556	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
50	nsv892181	chr9:6680477-7070962	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6703000-6704600	Active TSS	Primary T killer memory cells from peripheral blood	blood
2	chr9:6703000-6704600	Active TSS	Placenta Amnion	Placenta Amnion
3	chr9:6703200-6704400	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr9:6703200-6704400	Active TSS	Duodenum Mucosa	Duodenum
5	chr9:6703200-6704400	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr9:6703200-6704600	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr9:6703200-6704600	Active TSS	Primary T helper naive cells from peripheral blood	blood
8	chr9:6703200-6704600	Active TSS	Liver	Liver
9	chr9:6703200-6704600	Active TSS	Colon Smooth Muscle	Colon
10	chr9:6703200-6704800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr9:6703200-6704800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:6703200-6704800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:6703200-6704800	Active TSS	Colonic Mucosa	Colon
14	chr9:6703200-6705000	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr9:6703200-6705000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr9:6703400-6704400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr9:6703400-6704400	Active TSS	Fetal Intestine Small	intestine
18	chr9:6703400-6704400	Active TSS	Right Ventricle	heart
19	chr9:6703400-6704600	Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr9:6703400-6704600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:6703400-6704600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:6703400-6704600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr9:6703400-6704600	Active TSS	Brain Cingulate Gyrus	brain
24	chr9:6703400-6704600	Active TSS	Brain Substantia Nigra	brain
25	chr9:6703400-6704600	Active TSS	Esophagus	oesophagus
26	chr9:6703400-6704600	Active TSS	Fetal Intestine Large	intestine
27	chr9:6703400-6704600	Bivalent/Poised TSS	Fetal Stomach	stomach
28	chr9:6703400-6704600	Active TSS	Rectal Smooth Muscle	rectum
29	chr9:6703400-6704600	Active TSS	Small Intestine	intestine
30	chr9:6703400-6704600	Active TSS	NH-A	brain
31	chr9:6703400-6704800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:6703400-6704800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr9:6703400-6704800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:6703400-6704800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:6703400-6704800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:6703400-6704800	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr9:6703400-6704800	Active TSS	Brain Hippocampus Middle	brain
38	chr9:6703400-6704800	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr9:6703400-6704800	Active TSS	Fetal Kidney	kidney
40	chr9:6703400-6704800	Active TSS	Fetal Lung	lung
41	chr9:6703400-6704800	Active TSS	NHDF-Ad	bronchial
42	chr9:6703400-6704800	Active TSS	Osteobl	bone
43	chr9:6703400-6705000	Active TSS	H9 Cell Line	embryonic stem cell
44	chr9:6703400-6705000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr9:6703400-6705000	Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr9:6703400-6705000	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr9:6703400-6705000	Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr9:6703400-6705000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr9:6703400-6705000	Active TSS	Brain Anterior Caudate	brain
50	chr9:6703400-6705000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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