Variant report

Variant	rs820841
Chromosome Location	chr5:73970597-73970598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:73968225..73971112-chr5:73973488..73976087,2	K562	blood:
2	chr5:73969331..73972056-chr5:73981357..73983781,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2936918	0.92[CEU][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs3104693	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6896615	0.85[EUR][1000 genomes]
rs820862	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs820863	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs820866	0.88[CEU][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs820868	0.83[EUR][1000 genomes]
rs820869	0.89[CEU][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs820870	0.89[CEU][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs820872	0.89[CEU][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs820876	0.86[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs820841	MAP1B	cis	parietal	SCAN
rs820841	HEXB	cis	parietal	SCAN
rs820841	TMEM174	cis	parietal	SCAN
rs820841	NSA2	cis	cerebellum	SCAN
rs820841	HEXB	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73948600-73971400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:73966600-73974600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:73966800-73980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:73966800-73980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:73968600-73971400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:73968600-73971800	Enhancers	HepG2	liver
7	chr5:73969400-73971400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:73969400-73972400	Weak transcription	Hela-S3	cervix
9	chr5:73969600-73973200	Weak transcription	Osteobl	bone
10	chr5:73969600-73975400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:73969600-73975800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:73969800-73970600	Weak transcription	K562	blood
13	chr5:73969800-73972000	Weak transcription	Placenta	Placenta
14	chr5:73969800-73973200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:73969800-73973200	Weak transcription	NH-A	brain
16	chr5:73969800-73975800	Weak transcription	NHEK	skin
17	chr5:73969800-73978800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:73969800-73980600	Weak transcription	HMEC	breast
19	chr5:73969800-73980600	Weak transcription	HSMM	muscle
20	chr5:73969800-73980800	Weak transcription	NHLF	lung
21	chr5:73970000-73973000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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