Variant report

Variant	rs820868
Chromosome Location	chr5:73979807-73979808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:73979598..73982392-chr5:73983812..73990818,9	MCF-7	breast:
2	chr5:73978938..73982006-chr5:74061565..74064417,3	K562	blood:
3	chr5:73979743..73983565-chr5:73984545..73990071,12	K562	blood:
4	chr5:73979647..73982006-chr5:74061742..74064417,2	K562	blood:

Variant related genes	Relation type
ENSG00000164347	Chromatin interaction
ENSG00000049860	Chromatin interaction
ENSG00000164346	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2936918	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6896615	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs820841	0.83[EUR][1000 genomes]
rs820862	0.84[EUR][1000 genomes]
rs820863	0.83[EUR][1000 genomes]
rs820866	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs820867	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs820869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820871	0.84[AFR][1000 genomes]
rs820872	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs820874	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs820876	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs820879	0.88[AFR][1000 genomes]
rs820880	0.85[AFR][1000 genomes]
rs820881	0.82[AFR][1000 genomes]
rs820882	0.85[AFR][1000 genomes]
rs820883	0.82[AFR][1000 genomes]
rs820885	0.85[AFR][1000 genomes]
rs820887	0.82[AFR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73966800-73980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:73966800-73980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:73969800-73980600	Weak transcription	HMEC	breast
4	chr5:73969800-73980600	Weak transcription	HSMM	muscle
5	chr5:73969800-73980800	Weak transcription	NHLF	lung
6	chr5:73971800-73980200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:73973800-73980600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:73975200-73980200	Weak transcription	Spleen	Spleen
9	chr5:73976000-73980600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:73976200-73980200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:73976200-73980600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:73976200-73980600	Weak transcription	Osteobl	bone
13	chr5:73976200-73981000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:73976400-73980000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr5:73976400-73980200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:73976400-73980200	Weak transcription	Hela-S3	cervix
17	chr5:73976800-73980600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr5:73977400-73980800	Weak transcription	HSMMtube	muscle
19	chr5:73978000-73980000	Weak transcription	K562	blood
20	chr5:73978400-73980600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:73978400-73980600	Enhancers	Fetal Intestine Large	intestine
22	chr5:73978600-73980600	Enhancers	Fetal Intestine Small	intestine
23	chr5:73979000-73980200	Weak transcription	A549	lung
24	chr5:73979000-73980800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:73979000-73980800	Weak transcription	NH-A	brain
26	chr5:73979200-73980600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:73979200-73980600	Weak transcription	NHEK	skin
28	chr5:73979200-73980800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr5:73979400-73980600	Enhancers	Placenta	Placenta

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