Variant report

Variant	rs820843
Chromosome Location	chr5:73968469-73968470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:73956419..73958700-chr5:73966075..73968890,2	K562	blood:
2	chr5:73968444..73969362-chr5:74215054..74216242,3	MCF-7	breast:
3	chr5:73968225..73971112-chr5:73973488..73976087,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs820864	0.88[ASW][hapmap];0.83[CEU][hapmap];0.88[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820871	0.86[CEU][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820879	0.86[CEU][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820880	0.83[CEU][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.94[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820881	0.82[CEU][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820882	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs820883	0.87[CEU][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820884	0.88[ASW][hapmap];0.87[CEU][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820885	0.87[CEU][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.94[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820886	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs820887	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs820888	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521024	chr5:73967964-73969058	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73948600-73971400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:73956400-73969000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:73962400-73969000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:73962600-73969200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:73963600-73968600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:73963800-73969000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:73966200-73969000	Weak transcription	Hela-S3	cervix
8	chr5:73966600-73968800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:73966600-73969200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:73966600-73969200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:73966600-73974600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:73966800-73969000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:73966800-73969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:73966800-73980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:73966800-73980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:73967200-73968600	Weak transcription	HepG2	liver
17	chr5:73967400-73969000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr5:73967600-73968600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr5:73967600-73969400	Enhancers	Right Ventricle	heart
20	chr5:73967800-73968600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr5:73967800-73969400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:73968000-73969000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr5:73968000-73969200	Enhancers	Left Ventricle	heart
24	chr5:73968200-73969000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr5:73968200-73969000	Enhancers	Brain Hippocampus Middle	brain
26	chr5:73968200-73969000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:73968200-73969000	Weak transcription	Fetal Brain Female	brain
28	chr5:73968200-73969000	Enhancers	Stomach Smooth Muscle	stomach
29	chr5:73968200-73969400	Enhancers	Fetal Stomach	stomach
30	chr5:73968200-73969800	Enhancers	Fetal Heart	heart
31	chr5:73968400-73968800	Weak transcription	Pancreas	Pancrea
32	chr5:73968400-73969000	Enhancers	Rectal Smooth Muscle	rectum
33	chr5:73968400-73969000	Weak transcription	Right Atrium	heart
34	chr5:73968400-73969000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr5:73968400-73969000	Enhancers	HSMMtube	muscle
36	chr5:73968400-73969800	Enhancers	Fetal Brain Male	brain

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