Variant report

Variant	rs820864
Chromosome Location	chr5:73973359-73973360
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs820843	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820871	0.95[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820879	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820880	0.82[ASW][hapmap];0.91[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820881	0.91[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820882	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs820883	0.83[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820884	1.00[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820885	0.83[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820886	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs820887	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs820888	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73966600-73974600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:73966800-73980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:73966800-73980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:73969600-73975400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:73969600-73975800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:73969800-73975800	Weak transcription	NHEK	skin
7	chr5:73969800-73978800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:73969800-73980600	Weak transcription	HMEC	breast
9	chr5:73969800-73980600	Weak transcription	HSMM	muscle
10	chr5:73969800-73980800	Weak transcription	NHLF	lung
11	chr5:73971800-73980200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:73972200-73975200	Weak transcription	HUVEC	blood vessel
13	chr5:73972400-73973800	Enhancers	Hela-S3	cervix
14	chr5:73973000-73973800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr5:73973200-73973400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:73973200-73973400	Enhancers	Placenta	Placenta
17	chr5:73973200-73973600	Enhancers	NH-A	brain
18	chr5:73973200-73973600	Enhancers	Osteobl	bone
19	chr5:73973200-73973800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links