Variant report

Variant	rs821737
Chromosome Location	chr5:111666811-111666812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111664622..111667062-chr5:111669246..111671249,2	K562	blood:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10036273	1.00[EUR][1000 genomes]
rs10039730	1.00[EUR][1000 genomes]
rs10060534	1.00[EUR][1000 genomes]
rs10060962	1.00[EUR][1000 genomes]
rs10068969	1.00[EUR][1000 genomes]
rs10515444	1.00[EUR][1000 genomes]
rs10515447	1.00[EUR][1000 genomes]
rs12109843	1.00[EUR][1000 genomes]
rs13354202	1.00[EUR][1000 genomes]
rs1524423	1.00[EUR][1000 genomes]
rs17134229	1.00[EUR][1000 genomes]
rs17134238	1.00[EUR][1000 genomes]
rs17134242	1.00[EUR][1000 genomes]
rs17134320	1.00[EUR][1000 genomes]
rs17134328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134370	1.00[EUR][1000 genomes]
rs17134418	1.00[EUR][1000 genomes]
rs17134478	1.00[EUR][1000 genomes]
rs17134479	1.00[EUR][1000 genomes]
rs17134502	1.00[EUR][1000 genomes]
rs17134556	1.00[EUR][1000 genomes]
rs17134559	1.00[EUR][1000 genomes]
rs17134564	1.00[EUR][1000 genomes]
rs17134566	1.00[EUR][1000 genomes]
rs17134569	1.00[EUR][1000 genomes]
rs17134595	1.00[EUR][1000 genomes]
rs17134619	1.00[EUR][1000 genomes]
rs17134621	1.00[EUR][1000 genomes]
rs2140624	1.00[EUR][1000 genomes]
rs2416285	1.00[EUR][1000 genomes]
rs28851506	1.00[EUR][1000 genomes]
rs2900063	1.00[EUR][1000 genomes]
rs35368801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3903144	1.00[EUR][1000 genomes]
rs3985058	1.00[EUR][1000 genomes]
rs4090543	1.00[EUR][1000 genomes]
rs4130531	1.00[EUR][1000 genomes]
rs57449938	1.00[EUR][1000 genomes]
rs57536989	1.00[EUR][1000 genomes]
rs59413146	1.00[EUR][1000 genomes]
rs59723280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59728660	1.00[EUR][1000 genomes]
rs59911735	1.00[EUR][1000 genomes]
rs60901135	1.00[EUR][1000 genomes]
rs61620009	1.00[EUR][1000 genomes]
rs6594594	1.00[EUR][1000 genomes]
rs6594596	1.00[EUR][1000 genomes]
rs6861534	1.00[EUR][1000 genomes]
rs6865127	1.00[EUR][1000 genomes]
rs6865907	1.00[EUR][1000 genomes]
rs6866068	1.00[EUR][1000 genomes]
rs6875983	1.00[EUR][1000 genomes]
rs6878092	1.00[EUR][1000 genomes]
rs721054	1.00[EUR][1000 genomes]
rs721055	1.00[EUR][1000 genomes]
rs73214232	1.00[EUR][1000 genomes]
rs73214236	1.00[EUR][1000 genomes]
rs73214243	1.00[EUR][1000 genomes]
rs73214250	1.00[EUR][1000 genomes]
rs73214252	1.00[EUR][1000 genomes]
rs73214255	1.00[EUR][1000 genomes]
rs73214261	1.00[EUR][1000 genomes]
rs73214264	1.00[EUR][1000 genomes]
rs73214269	1.00[EUR][1000 genomes]
rs73214270	1.00[EUR][1000 genomes]
rs73214274	1.00[EUR][1000 genomes]
rs73216591	1.00[EUR][1000 genomes]
rs73216602	1.00[EUR][1000 genomes]
rs73218303	1.00[EUR][1000 genomes]
rs73218309	1.00[EUR][1000 genomes]
rs73218315	1.00[EUR][1000 genomes]
rs73218319	1.00[EUR][1000 genomes]
rs73218335	1.00[EUR][1000 genomes]
rs73218339	1.00[EUR][1000 genomes]
rs73218340	1.00[EUR][1000 genomes]
rs73218345	1.00[EUR][1000 genomes]
rs73218347	1.00[EUR][1000 genomes]
rs73218348	1.00[EUR][1000 genomes]
rs73218349	1.00[EUR][1000 genomes]
rs73220307	1.00[EUR][1000 genomes]
rs73220310	1.00[EUR][1000 genomes]
rs73220313	1.00[EUR][1000 genomes]
rs73222143	1.00[EUR][1000 genomes]
rs73222145	1.00[EUR][1000 genomes]
rs73222146	1.00[EUR][1000 genomes]
rs73222148	1.00[EUR][1000 genomes]
rs73222150	1.00[EUR][1000 genomes]
rs73222155	1.00[EUR][1000 genomes]
rs73222163	1.00[EUR][1000 genomes]
rs73222167	1.00[EUR][1000 genomes]
rs7446816	1.00[EUR][1000 genomes]
rs7702999	1.00[EUR][1000 genomes]
rs7707028	1.00[EUR][1000 genomes]
rs7710041	1.00[EUR][1000 genomes]
rs7733415	1.00[EUR][1000 genomes]
rs821740	1.00[EUR][1000 genomes]
rs821741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs821742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs821743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs821744	1.00[AMR][1000 genomes]
rs866597	1.00[EUR][1000 genomes]
rs956273	1.00[EUR][1000 genomes]
rs986797	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv948869	chr5:111476404-111695183	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv531291	chr5:111497440-111756788	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv599371	chr5:111519018-111676755	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1021530	chr5:111626266-111683317	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1028181	chr5:111628901-111683317	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv882714	chr5:111655382-111807579	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111637400-111684600	Weak transcription	Aorta	Aorta
2	chr5:111652800-111667000	Weak transcription	Esophagus	oesophagus
3	chr5:111653200-111674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:111659200-111668800	Weak transcription	Pancreas	Pancrea
5	chr5:111661400-111669000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:111664200-111669000	Enhancers	Fetal Heart	heart
7	chr5:111665400-111667200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:111665400-111667800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr5:111665400-111668800	Enhancers	HUVEC	blood vessel
10	chr5:111665400-111670600	Weak transcription	Hela-S3	cervix
11	chr5:111665400-111674600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:111665600-111667000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:111665600-111667000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:111665600-111667000	Weak transcription	Gastric	stomach
15	chr5:111665600-111667200	Weak transcription	Right Atrium	heart
16	chr5:111665600-111668600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:111665600-111668600	Weak transcription	Fetal Brain Female	brain
18	chr5:111665600-111668800	Weak transcription	Fetal Lung	lung
19	chr5:111665600-111669000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr5:111665600-111669000	Weak transcription	Fetal Kidney	kidney
21	chr5:111665600-111669200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:111665600-111674000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr5:111665800-111667200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:111665800-111668400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr5:111665800-111668800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr5:111665800-111668800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:111665800-111669200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:111666000-111667400	Weak transcription	Adipose Nuclei	Adipose
29	chr5:111666000-111667400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr5:111666000-111668600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr5:111666000-111668600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr5:111666000-111669000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr5:111666000-111669800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr5:111666200-111667400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr5:111666200-111667600	Enhancers	Lung	lung
36	chr5:111666200-111668400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr5:111666200-111668600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr5:111666400-111668800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:111666800-111667600	Enhancers	Right Ventricle	heart
40	chr5:111666800-111667800	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links