Variant report

Variant	rs823519
Chromosome Location	chr3:195270869-195270870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:37)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:37 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GTF2F1	chr3:195269826-195270944	H1-hESC	embryonic stem cell:	n/a	n/a
2	REST	chr3:195269201-195271032	H1-neurons	neurons:	n/a	chr3:195270282-195270292
3	MAX	chr3:195269911-195271141	HepG2	liver:	n/a	n/a
4	CEBPB	chr3:195270526-195270959	HepG2	liver:	n/a	n/a
5	ATF2	chr3:195270255-195270926	H1-hESC	embryonic stem cell:	n/a	n/a
6	SP1	chr3:195270645-195271146	H1-hESC	embryonic stem cell:	n/a	n/a
7	HCFC1	chr3:195269926-195270964	K562	blood:	n/a	n/a
8	POLR2A	chr3:195269624-195271847	HepG2	liver:	n/a	n/a
9	JUN	chr3:195269797-195271462	K562	blood:	n/a	chr3:195270278-195270287 chr3:195270424-195270437
10	MAX	chr3:195269907-195270876	MCF-7	breast:	n/a	n/a
11	ARID3A	chr3:195270482-195271034	HepG2	liver:	n/a	n/a
12	YY1	chr3:195270561-195271200	HepG2	liver:	n/a	n/a
13	JUND	chr3:195270230-195270935	HepG2	liver:	n/a	chr3:195270278-195270287
14	RCOR1	chr3:195269962-195271024	HepG2	liver:	n/a	n/a
15	RCOR1	chr3:195270014-195270924	K562	blood:	n/a	n/a
16	POLR2A	chr3:195270699-195270975	HepG2	liver:	n/a	n/a
17	CTCF	chr3:195270860-195271010	HepG2	liver:	n/a	n/a
18	NR2F2	chr3:195269249-195271068	K562	blood:	n/a	n/a
19	SIN3A	chr3:195269290-195270972	H1-hESC	embryonic stem cell:	n/a	chr3:195270306-195270317
20	FOXA1	chr3:195270368-195271023	HepG2	liver:	n/a	n/a
21	MXI1	chr3:195269329-195271687	HepG2	liver:	n/a	n/a
22	CTCF	chr3:195270780-195270930	AG04449	skin:	n/a	n/a
23	MAX	chr3:195270820-195271024	HepG2	liver:	n/a	n/a
24	POLR2A	chr3:195269465-195270879	K562	blood:	n/a	n/a
25	MAX	chr3:195269500-195270973	K562	blood:	n/a	n/a
26	TBP	chr3:195270756-195270911	H1-hESC	embryonic stem cell:	n/a	n/a
27	MAZ	chr3:195269989-195271151	HepG2	liver:	n/a	n/a
28	TCF12	chr3:195269870-195270915	ECC-1	luminal epithelium:	n/a	chr3:195270694-195270704
29	CREB1	chr3:195269936-195271054	HepG2	liver:	n/a	n/a
30	MAZ	chr3:195269950-195270951	K562	blood:	n/a	n/a
31	JUND	chr3:195269975-195270977	K562	blood:	n/a	chr3:195270278-195270287
32	CHD2	chr3:195269813-195270997	HepG2	liver:	n/a	n/a
33	JUND	chr3:195270790-195270992	H1-hESC	embryonic stem cell:	n/a	n/a
34	RFX5	chr3:195270062-195271016	HepG2	liver:	n/a	n/a
35	MYC	chr3:195269773-195271041	K562	blood:	n/a	n/a
36	KAP1	chr3:195269915-195271073	U2OS	brain:	n/a	n/a
37	E2F6	chr3:195269550-195270965	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:195270848-195270898	HRCEpiC	kidney:	n/a
2	chr3:195270848-195270898	AG10803	skin:	n/a
3	chr3:195270848-195270898	HUVEC	blood vessel:	n/a
4	chr3:195270848-195270898	Caco-2	colon:	n/a
5	chr3:195270848-195270898	ECC-1	luminal epithelium:	n/a
6	chr3:195270848-195270898	K562	blood:	n/a
7	chr3:195270848-195270898	HL-60	blood:	n/a
8	chr3:195270848-195270898	Jurkat	blood:	n/a
9	chr3:195270848-195270898	NT2-D1	testis:	n/a
10	chr3:195270848-195270898	T-47D	breast:	n/a
11	chr3:195270848-195270898	HEK293	kidney:	embryo
12	chr3:195270848-195270898	U87	brain:	n/a
13	chr3:195270848-195270898	GM12878	blood:	n/a
14	chr3:195270848-195270898	RPTEC	kidney:	n/a
15	chr3:195270848-195270898	MCF-7	breast:	n/a
16	chr3:195270848-195270898	ovcar-3	ovarian:	n/a
17	chr3:195270848-195270898	HCM	heart:	n/a
18	chr3:195270848-195270898	HRPEpiC	eye:	n/a
19	chr3:195270848-195270898	HMEC	breast:	n/a
20	chr3:195270848-195270898	Hela-S3	cervix:	n/a
21	chr3:195270848-195270898	SK-N-SH	brain:	n/a
22	chr3:195270848-195270898	SKMC	muscle:	n/a
23	chr3:195270848-195270898	HCPEpiC	choroid plexus:	n/a
24	chr3:195270848-195270898	GM19239	blood:	n/a
25	chr3:195270848-195270898	SK-N-SH_RA	brain:	n/a
26	chr3:195270848-195270898	ProgFib	skin:	n/a
27	chr3:195270848-195270898	CMK	blood:	n/a
28	chr3:195270848-195270898	SK-N-MC	brain:	n/a
29	chr3:195270848-195270898	AG04449	skin:	fetal
30	chr3:195270848-195270898	BJ	skin:	n/a
31	chr3:195270848-195270898	NHBE	bronchial:	n/a
32	chr3:195270848-195270898	NH-A	brain:	n/a
33	chr3:195270848-195270898	HNPCEpiC	eye:	n/a
34	chr3:195270848-195270898	AG09309	skin:	n/a
35	chr3:195270848-195270898	A549	lung:	n/a
36	chr3:195270848-195270898	PANC-1	pancreas:	n/a
37	chr3:195270848-195270898	HCT-116	colon:	n/a
38	chr3:195270848-195270898	GM12892	blood:	n/a
39	chr3:195270848-195270898	SAEC	small airway:	n/a
40	chr3:195270848-195270898	HCF	heart:	n/a
41	chr3:195270848-195270898	HAEpiC	amniotic membrane:	n/a
42	chr3:195270848-195270898	LNCaP	prostate:	n/a
43	chr3:195270848-195270898	HepG2	liver:	n/a
44	chr3:195270848-195270898	MCF10A-Er-Src	breast:	n/a
45	chr3:195270848-195270898	NHDF-neo	bronchial:	n/a
46	chr3:195270848-195270898	PFSK-1	brain:	n/a
47	chr3:195270848-195270898	GM12891	blood:	n/a
48	chr3:195270848-195270898	PrEC	prostate:	n/a
49	chr3:195270848-195270898	HRE	kidney:	n/a
50	chr3:195270848-195270898	HPAEpiC	pulmonary alveolar:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:195162578..195166480-chr3:195268710..195271525,3	K562	blood:
2	chr3:195269773..195271575-chr3:195273173..195274737,2	K562	blood:
3	chr3:195268830..195271247-chr3:195272150..195274429,3	MCF-7	breast:
4	chr3:194990474..194992109-chr3:195269592..195271685,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000223711	TF binding region
PPP1R2	TF binding region
ENSG00000223711	CpG island
PPP1R2	CpG island
ENSG00000223711	Chromatin interaction
ENSG00000173950	Chromatin interaction
ENSG00000114331	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1467282	1.00[ASN][1000 genomes]
rs17847363	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2641358	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2641361	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2641379	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28564334	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35792292	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4677687	1.00[ASN][1000 genomes]
rs4677689	1.00[ASN][1000 genomes]
rs62287557	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6605336	1.00[ASN][1000 genomes]
rs6605337	1.00[ASN][1000 genomes]
rs6801044	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647318	1.00[ASN][1000 genomes]
rs823500	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs823501	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs823510	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs823511	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs823514	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs823517	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs823525	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs823526	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs862063	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs862064	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs862065	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014826	chr3:194834615-195631793	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
2	nsv536876	chr3:194834615-195631793	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
3	nsv533904	chr3:194868329-195438728	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
4	esv1832781	chr3:194902818-195528226	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
5	nsv432508	chr3:194916131-195478861	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	59 gene(s)	inside rSNPs	diseases
6	nsv432510	chr3:194935314-195478861	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	59 gene(s)	inside rSNPs	diseases
7	nsv1005519	chr3:194964301-195340515	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv432511	chr3:194986167-195479748	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
9	nsv432512	chr3:195007260-195475989	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
10	nsv878138	chr3:195057001-195477791	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
11	nsv1006229	chr3:195071421-195474751	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
12	esv2754364	chr3:195102703-195553690	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
13	esv2757028	chr3:195102787-195479748	Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
14	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
15	nsv432513	chr3:195121072-195478861	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
16	nsv432514	chr3:195121110-195478861	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
17	nsv432515	chr3:195121110-195528226	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
18	nsv829824	chr3:195131067-195286698	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
19	esv1845367	chr3:195175217-195486486	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
20	nsv1001387	chr3:195186128-195661538	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
21	esv1808194	chr3:195201080-195619882	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
22	esv1849415	chr3:195201080-195619882	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
23	esv1850702	chr3:195201080-195619882	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
24	nsv428102	chr3:195201080-195829426	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
25	nsv428430	chr3:195201080-195829426	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
26	nsv878145	chr3:195201451-195279119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
27	nsv1007617	chr3:195240812-195474751	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
28	esv2763776	chr3:195240824-195502119	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
29	nsv1010725	chr3:195249924-195459762	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
30	nsv1010480	chr3:195259254-195436069	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
31	nsv536879	chr3:195259254-195436069	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
32	nsv1007146	chr3:195259289-195442570	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
33	nsv1005951	chr3:195259289-195474751	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
34	nsv432518	chr3:195262521-195475989	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
35	nsv432517	chr3:195262521-195476085	Genic enhancers Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
36	nsv432516	chr3:195262521-195501938	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
37	nsv915895	chr3:195263824-195457677	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
38	nsv533198	chr3:195263979-195459589	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
39	nsv534205	chr3:195263987-195463502	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
40	nsv1012885	chr3:195268908-195459762	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195266800-195271000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr3:195268000-195271000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:195268000-195271200	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr3:195268400-195271000	Active TSS	H9 Cell Line	embryonic stem cell
5	chr3:195268400-195271000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:195268400-195271000	Active TSS	Fetal Kidney	kidney
7	chr3:195268600-195271000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr3:195268600-195271000	Active TSS	HSMM	muscle
9	chr3:195268800-195271000	Active TSS	Fetal Lung	lung
10	chr3:195268800-195271000	Active TSS	Psoas Muscle	Psoas
11	chr3:195269000-195271000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:195269000-195271000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr3:195269000-195271000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
14	chr3:195269000-195271000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:195269000-195271000	Active TSS	Brain Angular Gyrus	brain
16	chr3:195269000-195271000	Active TSS	Brain Substantia Nigra	brain
17	chr3:195269000-195271400	Active TSS	Fetal Brain Male	brain
18	chr3:195269200-195271000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:195269600-195271000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
20	chr3:195270200-195271000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chr3:195270400-195271000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr3:195270400-195271000	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
23	chr3:195270400-195271000	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr3:195270400-195271000	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr3:195270400-195271000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr3:195270400-195271000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr3:195270400-195271000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:195270400-195271000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:195270400-195271000	Flanking Active TSS	Fetal Thymus	thymus
30	chr3:195270400-195271000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr3:195270400-195271000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr3:195270400-195271000	Flanking Active TSS	Thymus	Thymus
33	chr3:195270400-195271000	Flanking Active TSS	Dnd41	blood
34	chr3:195270400-195271000	Flanking Active TSS	GM12878-XiMat	blood
35	chr3:195270400-195271000	Flanking Active TSS	Hela-S3	cervix
36	chr3:195270400-195271000	Flanking Active TSS	HMEC	breast
37	chr3:195270400-195271000	Flanking Active TSS	Osteobl	bone
38	chr3:195270400-195271200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr3:195270400-195271400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:195270400-195271400	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr3:195270400-195271400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr3:195270400-195272000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr3:195270400-195273200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr3:195270600-195271000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
45	chr3:195270600-195271000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:195270600-195271000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr3:195270600-195271000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
48	chr3:195270600-195271000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr3:195270600-195271000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr3:195270600-195271000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin

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