Variant report

Variant	rs825135
Chromosome Location	chr1:223602834-223602835
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:223592334..223594672-chr1:223600258..223603185,3	K562	blood:
2	chr1:223596035..223598867-chr1:223600908..223603274,2	K562	blood:
3	chr1:223599220..223603471-chr1:223604968..223609274,4	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4359029	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58890471	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs825132	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs825133	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv4687	chr1:223565080-223610362	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223595200-223609200	Weak transcription	Right Atrium	heart
2	chr1:223597400-223603000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:223597800-223603600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:223599400-223604600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:223601800-223603000	Enhancers	Esophagus	oesophagus
6	chr1:223601800-223605000	Enhancers	Colon Smooth Muscle	Colon
7	chr1:223602000-223604400	Enhancers	Fetal Heart	heart
8	chr1:223602000-223604400	Enhancers	Rectal Smooth Muscle	rectum
9	chr1:223602200-223604200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:223602200-223604200	Enhancers	NHEK	skin
11	chr1:223602200-223604400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr1:223602200-223604600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:223602200-223604600	Enhancers	Stomach Smooth Muscle	stomach
14	chr1:223602400-223603000	Enhancers	Psoas Muscle	Psoas
15	chr1:223602400-223603800	Enhancers	Fetal Muscle Leg	muscle
16	chr1:223602400-223603800	Enhancers	HSMMtube	muscle
17	chr1:223602400-223604200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:223602400-223604200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:223602400-223604200	Enhancers	NHDF-Ad	bronchial
20	chr1:223602400-223604400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:223602400-223604400	Enhancers	HMEC	breast
22	chr1:223602400-223604600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:223602600-223603000	Enhancers	Left Ventricle	heart
24	chr1:223602600-223603200	Enhancers	Ovary	ovary
25	chr1:223602600-223603800	Enhancers	Right Ventricle	heart
26	chr1:223602600-223603800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr1:223602600-223603800	Enhancers	HSMM	muscle
28	chr1:223602600-223604000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr1:223602600-223604000	Enhancers	Gastric	stomach
30	chr1:223602600-223604000	Enhancers	Stomach Mucosa	stomach
31	chr1:223602600-223604200	Enhancers	Pancreas	Pancrea
32	chr1:223602600-223604400	Enhancers	Osteobl	bone
33	chr1:223602800-223603600	Enhancers	Fetal Brain Male	brain
34	chr1:223602800-223603800	Weak transcription	Aorta	Aorta
35	chr1:223602800-223603800	Weak transcription	Fetal Stomach	stomach

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