Variant report

Variant	rs825140
Chromosome Location	chr1:223590954-223590955
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10796474	1.00[AMR][1000 genomes]
rs1417743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74148048	1.00[AMR][1000 genomes]
rs825138	0.91[AFR][1000 genomes]
rs825139	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv4687	chr1:223565080-223610362	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223588600-223591600	Weak transcription	Right Atrium	heart
2	chr1:223588800-223591200	Weak transcription	Pancreas	Pancrea
3	chr1:223590400-223591000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:223590600-223591600	Enhancers	Liver	Liver
5	chr1:223590600-223593600	Enhancers	HepG2	liver
6	chr1:223590800-223591400	Enhancers	A549	lung
7	chr1:223590800-223592200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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