Variant report

Variant	rs825458
Chromosome Location	chr12:124539791-124539792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10846592	0.94[ASN][1000 genomes]
rs10846593	0.94[ASN][1000 genomes]
rs10846597	0.93[ASN][1000 genomes]
rs10846599	0.93[ASN][1000 genomes]
rs10846600	0.93[ASN][1000 genomes]
rs11057436	0.97[ASN][1000 genomes]
rs12422529	0.83[EUR][1000 genomes]
rs1387669	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1686726	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1686755	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1716394	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1716407	0.84[EUR][1000 genomes]
rs1996698	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2451321	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2451322	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2460760	0.95[ASN][1000 genomes]
rs2460761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61953589	0.84[ASN][1000 genomes]
rs7309216	0.93[ASN][1000 genomes]
rs825455	0.89[EUR][1000 genomes]
rs825456	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs825459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs825461	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs825463	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs825465	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs825467	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs825473	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs825474	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs825475	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs825476	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs825477	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs825481	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs825482	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs825483	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs825484	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs825485	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs825486	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs844085	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs851132	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899580	chr12:124499542-124565258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124538400-124540200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:124538600-124542200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr12:124538800-124540200	Enhancers	Fetal Kidney	kidney
4	chr12:124538800-124542800	Weak transcription	Stomach Mucosa	stomach
5	chr12:124539200-124542000	Weak transcription	Fetal Lung	lung
6	chr12:124539200-124542200	Weak transcription	Fetal Brain Male	brain
7	chr12:124539200-124542200	Weak transcription	Fetal Stomach	stomach
8	chr12:124539200-124542400	Weak transcription	Fetal Brain Female	brain
9	chr12:124539200-124542400	Weak transcription	Fetal Muscle Leg	muscle
10	chr12:124539400-124541800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:124539400-124549600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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