Variant report

Variant	rs1996698
Chromosome Location	chr12:124535764-124535765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10773049	0.91[ASN][1000 genomes]
rs10773050	0.91[ASN][1000 genomes]
rs10773051	0.92[ASN][1000 genomes]
rs10773052	0.92[ASN][1000 genomes]
rs10846583	0.92[ASN][1000 genomes]
rs10846584	0.96[ASN][1000 genomes]
rs10846585	0.98[ASN][1000 genomes]
rs10846586	0.96[ASN][1000 genomes]
rs11057425	0.98[ASN][1000 genomes]
rs12422529	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12579086	0.99[ASN][1000 genomes]
rs1387669	0.88[EUR][1000 genomes]
rs1686726	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1686755	0.89[EUR][1000 genomes]
rs1716394	0.87[EUR][1000 genomes]
rs1716407	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2451321	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2451322	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2460761	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4765015	0.99[ASN][1000 genomes]
rs4765019	0.94[ASN][1000 genomes]
rs4765204	0.99[ASN][1000 genomes]
rs56962716	0.90[ASN][1000 genomes]
rs825452	0.91[ASN][1000 genomes]
rs825453	0.92[ASN][1000 genomes]
rs825455	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs825456	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs825458	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs825459	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs825461	0.85[EUR][1000 genomes]
rs825463	0.88[EUR][1000 genomes]
rs825465	0.84[EUR][1000 genomes]
rs825467	0.81[EUR][1000 genomes]
rs825473	0.83[EUR][1000 genomes]
rs825474	0.84[EUR][1000 genomes]
rs825475	0.84[EUR][1000 genomes]
rs825476	0.84[EUR][1000 genomes]
rs825477	0.81[EUR][1000 genomes]
rs825481	0.84[EUR][1000 genomes]
rs825482	0.84[EUR][1000 genomes]
rs825483	0.84[EUR][1000 genomes]
rs825484	0.83[EUR][1000 genomes]
rs825485	0.84[EUR][1000 genomes]
rs825486	0.84[EUR][1000 genomes]
rs825508	0.90[ASN][1000 genomes]
rs844085	0.84[EUR][1000 genomes]
rs851132	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs863750	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899580	chr12:124499542-124565258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124530600-124539000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:124534600-124538200	Weak transcription	Fetal Kidney	kidney
3	chr12:124534600-124538400	Weak transcription	Fetal Muscle Leg	muscle
4	chr12:124534600-124538400	Weak transcription	Stomach Mucosa	stomach
5	chr12:124534800-124538600	Weak transcription	Fetal Heart	heart

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