Variant report

Variant	rs10846584
Chromosome Location	chr12:124517429-124517430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:124456427..124458717-chr12:124514754..124517707,2	MCF-7	breast:
2	chr12:124285925..124286799-chr12:124516900..124517700,4	MCF-7	breast:
3	chr12:124517304..124517818-chr12:124805690..124806229,2	MCF-7	breast:
4	chr12:124516657..124517505-chr12:125251258..125252137,2	K562	blood:
5	chr12:124389600..124390517-chr12:124516534..124517510,2	K562	blood:
6	chr12:124294281..124295830-chr12:124516954..124519275,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179195	Chromatin interaction
ENSG00000119242	Chromatin interaction
ENSG00000178882	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10773049	0.95[ASN][1000 genomes]
rs10773050	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10773051	0.96[ASN][1000 genomes]
rs10773052	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10846583	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10846585	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10846586	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11057425	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12422529	0.90[ASN][1000 genomes]
rs12579086	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1716407	0.99[ASN][1000 genomes]
rs1996698	0.96[ASN][1000 genomes]
rs4765015	0.97[ASN][1000 genomes]
rs4765019	0.93[ASN][1000 genomes]
rs4765204	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56962716	0.94[ASN][1000 genomes]
rs825452	0.95[ASN][1000 genomes]
rs825453	0.96[ASN][1000 genomes]
rs825455	0.96[ASN][1000 genomes]
rs825456	0.94[ASN][1000 genomes]
rs825508	0.94[ASN][1000 genomes]
rs851132	0.96[ASN][1000 genomes]
rs863750	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899580	chr12:124499542-124565258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124499600-124521400	Weak transcription	Brain Germinal Matrix	brain
2	chr12:124510600-124518400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr12:124510600-124520600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:124511800-124521000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:124512400-124520600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:124513600-124523400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:124515000-124526000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:124515000-124531800	Weak transcription	Fetal Intestine Small	intestine
9	chr12:124515200-124521000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:124515400-124519000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr12:124515400-124521000	Weak transcription	Fetal Stomach	stomach
12	chr12:124515400-124528400	Weak transcription	Fetal Muscle Leg	muscle
13	chr12:124515400-124529600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr12:124515600-124520600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:124515600-124521000	Weak transcription	Fetal Thymus	thymus
16	chr12:124515600-124521000	Weak transcription	A549	lung
17	chr12:124516000-124518800	Weak transcription	HSMMtube	muscle
18	chr12:124516800-124520800	Weak transcription	HSMM	muscle
19	chr12:124517000-124518400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr12:124517000-124518600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr12:124517000-124520600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr12:124517000-124520600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr12:124517000-124520600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr12:124517000-124520800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr12:124517000-124521000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr12:124517000-124521000	Weak transcription	NH-A	brain
27	chr12:124517000-124521000	Weak transcription	NHDF-Ad	bronchial
28	chr12:124517000-124521400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr12:124517000-124521400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr12:124517200-124520800	Weak transcription	Osteobl	bone
31	chr12:124517200-124521400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr12:124517400-124518200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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