Variant report

Variant	rs10773052
Chromosome Location	chr12:124510406-124510407
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9384097..9385753-chr12:124509844..124511367,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10773049	0.99[ASN][1000 genomes]
rs10773050	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10773051	1.00[ASN][1000 genomes]
rs10846583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10846584	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10846585	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10846586	0.90[ASN][1000 genomes]
rs11057425	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12422529	0.87[ASN][1000 genomes]
rs12579086	0.93[ASN][1000 genomes]
rs1716407	0.94[ASN][1000 genomes]
rs1996698	0.92[ASN][1000 genomes]
rs4765015	0.93[ASN][1000 genomes]
rs4765019	0.89[ASN][1000 genomes]
rs4765204	0.93[ASN][1000 genomes]
rs56962716	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs825452	0.99[ASN][1000 genomes]
rs825453	1.00[ASN][1000 genomes]
rs825455	0.92[ASN][1000 genomes]
rs825456	0.90[ASN][1000 genomes]
rs825508	0.99[ASN][1000 genomes]
rs851132	0.92[ASN][1000 genomes]
rs863750	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899580	chr12:124499542-124565258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124497800-124511000	Weak transcription	Psoas Muscle	Psoas
2	chr12:124497800-124511200	Weak transcription	Fetal Brain Male	brain
3	chr12:124497800-124511400	Weak transcription	Gastric	stomach
4	chr12:124497800-124511600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr12:124498000-124510800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr12:124498000-124511000	Weak transcription	HUVEC	blood vessel
7	chr12:124498200-124510800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr12:124498400-124511000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:124498400-124511000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr12:124498400-124511600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr12:124498400-124514600	Weak transcription	Spleen	Spleen
12	chr12:124498400-124517000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:124498800-124511200	Weak transcription	Hela-S3	cervix
14	chr12:124499600-124521400	Weak transcription	Brain Germinal Matrix	brain
15	chr12:124500400-124513800	Weak transcription	Fetal Kidney	kidney
16	chr12:124500600-124510800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr12:124500600-124511000	Weak transcription	Aorta	Aorta
18	chr12:124500600-124511200	Weak transcription	NHLF	lung
19	chr12:124500800-124514600	Weak transcription	Fetal Brain Female	brain
20	chr12:124505800-124511000	Weak transcription	Right Atrium	heart
21	chr12:124506000-124510600	Weak transcription	Right Ventricle	heart
22	chr12:124506000-124510800	Weak transcription	Brain Angular Gyrus	brain
23	chr12:124507000-124511000	Weak transcription	Fetal Intestine Small	intestine
24	chr12:124507000-124513000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr12:124508000-124513600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr12:124508200-124510600	Enhancers	Primary hematopoietic stem cells	blood
27	chr12:124508200-124513400	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr12:124508200-124515200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr12:124508400-124513400	Enhancers	Fetal Muscle Trunk	muscle
30	chr12:124508400-124513800	Enhancers	Placenta	Placenta
31	chr12:124508600-124512800	Enhancers	NHDF-Ad	bronchial
32	chr12:124508800-124511000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr12:124508800-124511400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr12:124509200-124510600	Genic enhancers	Fetal Stomach	stomach
35	chr12:124509200-124511000	Enhancers	Fetal Heart	heart
36	chr12:124509200-124513200	Enhancers	Fetal Muscle Leg	muscle
37	chr12:124509400-124511000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr12:124509600-124510800	Weak transcription	NH-A	brain
39	chr12:124509600-124511000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr12:124509600-124511000	Weak transcription	HSMM	muscle
41	chr12:124509600-124511200	Weak transcription	K562	blood
42	chr12:124509600-124511400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr12:124509600-124512200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr12:124509600-124514400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr12:124509800-124510800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr12:124509800-124510800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr12:124509800-124510800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr12:124509800-124510800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr12:124509800-124510800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr12:124509800-124510800	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links