Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:124538115..124539228-chr12:124805608..124806447,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10773049	0.92[ASN][1000 genomes]
rs10773050	0.92[ASN][1000 genomes]
rs10773051	0.93[ASN][1000 genomes]
rs10773052	0.93[ASN][1000 genomes]
rs10846583	0.93[ASN][1000 genomes]
rs10846584	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10846585	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10846586	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11057425	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12422529	0.92[ASN][1000 genomes]
rs1716407	0.96[ASN][1000 genomes]
rs1996698	0.99[ASN][1000 genomes]
rs4765015	1.00[ASN][1000 genomes]
rs4765019	0.96[ASN][1000 genomes]
rs4765204	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56962716	0.92[ASN][1000 genomes]
rs825452	0.92[ASN][1000 genomes]
rs825453	0.93[ASN][1000 genomes]
rs825455	0.99[ASN][1000 genomes]
rs825456	0.97[ASN][1000 genomes]
rs825508	0.92[ASN][1000 genomes]
rs851132	0.99[ASN][1000 genomes]
rs863750	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899580	chr12:124499542-124565258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124530600-124539000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:124534600-124538200	Weak transcription	Fetal Kidney	kidney
3	chr12:124534600-124538400	Weak transcription	Fetal Muscle Leg	muscle
4	chr12:124534600-124538400	Weak transcription	Stomach Mucosa	stomach
5	chr12:124534800-124538600	Weak transcription	Fetal Heart	heart
6	chr12:124536800-124538200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:124537200-124538400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:124537600-124539000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:124537600-124539200	Enhancers	Fetal Stomach	stomach
10	chr12:124537600-124539400	Enhancers	Placenta	Placenta
11	chr12:124538000-124538200	Enhancers	HUVEC	blood vessel
12	chr12:124538000-124538800	Enhancers	Fetal Thymus	thymus

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