Variant report

Variant	rs825462
Chromosome Location	chr12:124559919-124559920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10846598	0.85[AFR][1000 genomes]
rs1716378	0.87[EUR][1000 genomes]
rs1716385	0.87[EUR][1000 genomes]
rs2451325	0.91[EUR][1000 genomes]
rs707333	0.91[EUR][1000 genomes]
rs825464	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs825479	0.91[EUR][1000 genomes]
rs866640	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899580	chr12:124499542-124565258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv520633	chr12:124548394-124683205	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124553800-124563200	Weak transcription	Stomach Mucosa	stomach
2	chr12:124554800-124560400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr12:124556800-124560800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:124557600-124562200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:124558800-124560200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:124558800-124560400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:124558800-124560400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:124558800-124562000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr12:124558800-124562400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr12:124558800-124565200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:124559200-124560800	Enhancers	Fetal Intestine Large	intestine
12	chr12:124559600-124560600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr12:124559600-124571000	Weak transcription	Fetal Intestine Small	intestine
14	chr12:124559800-124560800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr12:124559800-124560800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links