Variant report

Variant	rs825464
Chromosome Location	chr12:124558791-124558792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10846598	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1631624	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1686728	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1716375	0.82[EUR][1000 genomes]
rs1716378	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1716385	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1716403	1.00[ASN][1000 genomes]
rs1716409	1.00[ASN][1000 genomes]
rs2451323	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451325	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4765041	1.00[ASN][1000 genomes]
rs55673100	0.82[EUR][1000 genomes]
rs707333	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7138055	1.00[ASN][1000 genomes]
rs825454	1.00[ASN][1000 genomes]
rs825457	1.00[ASN][1000 genomes]
rs825462	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs825466	1.00[ASN][1000 genomes]
rs825479	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs825497	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs861131	1.00[ASN][1000 genomes]
rs866640	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899580	chr12:124499542-124565258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv520633	chr12:124548394-124683205	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124553800-124563200	Weak transcription	Stomach Mucosa	stomach
2	chr12:124554800-124560400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr12:124555400-124558800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:124555400-124558800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:124555400-124558800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:124555600-124558800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:124555800-124558800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr12:124555800-124558800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:124556000-124558800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr12:124556000-124558800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:124556800-124559400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr12:124556800-124559600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:124556800-124560800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:124557200-124558800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr12:124557600-124558800	Enhancers	Placenta	Placenta
16	chr12:124557600-124562200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr12:124557800-124558800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr12:124557800-124558800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr12:124557800-124559400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr12:124558200-124558800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr12:124558200-124558800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr12:124558200-124558800	Enhancers	HSMMtube	muscle
23	chr12:124558200-124559600	Enhancers	Fetal Intestine Small	intestine
24	chr12:124558400-124558800	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links