Variant report

Variant	rs827805
Chromosome Location	chr3:157919768-157919769
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157907378..157909218-chr3:157917201..157920072,2	K562	blood:

Extended variants
information (count: 156 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10470472	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10936131	0.92[JPT][hapmap]
rs10936132	0.83[CHB][hapmap]
rs1095633	0.82[CEU][hapmap]
rs1095636	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11706229	0.82[CEU][hapmap]
rs11715599	0.95[ASN][1000 genomes]
rs11717618	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11717923	0.83[CHB][hapmap]
rs11719153	0.89[CHB][hapmap]
rs1193511	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1193513	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1193536	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1204957	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12485440	1.00[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12486461	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12634807	0.80[CHB][hapmap]
rs12634832	0.84[EUR][1000 genomes]
rs12636733	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs12696067	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13059066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13061378	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13086348	0.82[CEU][hapmap]
rs1581408	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1608100	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1608101	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1608968	0.82[CEU][hapmap]
rs1609525	1.00[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1609526	0.91[EUR][1000 genomes]
rs1610266	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1610267	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1610268	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1624094	0.82[CEU][hapmap]
rs1724666	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1724679	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1724727	0.82[CEU][hapmap]
rs1724728	0.82[CEU][hapmap]
rs1724729	0.82[CEU][hapmap]
rs1729997	0.82[CEU][hapmap]
rs1729998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1730008	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1730029	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1730032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1730039	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1730041	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1730044	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1730054	0.82[CEU][hapmap]
rs1730099	0.92[CHB][hapmap];0.82[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17683939	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1851062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1915935	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2139696	0.88[ASN][1000 genomes]
rs2682402	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2682407	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2693528	0.81[CEU][hapmap]
rs2693540	0.96[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2693546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4261830	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4261833	0.80[CEU][hapmap]
rs4317053	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4346508	1.00[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4414801	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4431056	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4602343	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4622858	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4642075	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4680411	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4680412	1.00[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4680421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs60962704	0.95[ASN][1000 genomes]
rs6441174	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6762706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6768496	0.82[CEU][hapmap]
rs6770442	0.87[EUR][1000 genomes]
rs6773505	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6777853	0.82[CEU][hapmap]
rs6783175	0.83[EUR][1000 genomes]
rs6784968	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6789448	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6790608	1.00[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6794461	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6797626	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6800218	0.89[ASN][1000 genomes]
rs6803532	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6803630	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs696715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs698975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs698976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs698977	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs698979	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs698981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs698982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs698983	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs698984	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs698985	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs698992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs699918	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs699923	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs699925	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs699926	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73164102	0.98[ASN][1000 genomes]
rs73166358	0.86[ASN][1000 genomes]
rs7614572	0.92[CEU][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7618071	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7622971	1.00[CEU][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7623107	0.82[CEU][hapmap]
rs7624303	0.86[JPT][hapmap]
rs7630176	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7642751	0.81[CEU][hapmap]
rs7645383	0.82[CEU][hapmap]
rs7645475	0.84[CEU][hapmap]
rs7647342	1.00[CEU][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7653039	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs827102	0.82[AFR][1000 genomes]
rs827104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs827123	0.82[CEU][hapmap]
rs827130	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs827139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs827141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs827142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs827145	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs827146	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs827147	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs827149	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs827150	0.82[CEU][hapmap]
rs827153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs827155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs827157	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs827160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs827162	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs827168	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs827170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs827173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs827174	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs827801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs844141	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs860422	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs862352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs864331	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs864876	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs866657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9290020	0.90[EUR][1000 genomes]
rs9290021	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9811346	0.81[CEU][hapmap]
rs9814942	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9820954	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9840667	0.82[CEU][hapmap]
rs9848433	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9870745	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9871021	0.86[EUR][1000 genomes]
rs9881063	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs827805	RP11-538P18.2	cis	lung	GTEx
rs827805	RP11-538P18.2	cis	Nerve Tibial	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157914200-157984400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:157914800-157921200	Weak transcription	Pancreas	Pancrea
3	chr3:157917000-157926200	Weak transcription	Ovary	ovary
4	chr3:157918000-157938000	Weak transcription	Left Ventricle	heart
5	chr3:157918200-157920600	Weak transcription	Hela-S3	cervix
6	chr3:157918400-157919800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:157918400-157919800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:157918400-157920000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr3:157919000-157919800	ZNF genes & repeats	A549	lung
10	chr3:157919200-157919800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:157919200-157922000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:157919200-157923800	Weak transcription	Primary T cells from cord blood	blood
13	chr3:157919200-157958000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr3:157919400-157924000	Weak transcription	Fetal Lung	lung
15	chr3:157919400-157924200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:157919600-157934600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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