Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1183253	0.87[CEU][hapmap]
rs1390324	1.00[ASN][1000 genomes]
rs16929602	0.81[ASN][1000 genomes]
rs16929655	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16929667	0.99[ASN][1000 genomes]
rs16929669	0.99[ASN][1000 genomes]
rs16929681	0.81[GIH][hapmap]
rs2054889	0.81[CEU][hapmap]
rs4485193	0.81[ASN][1000 genomes]
rs4963930	0.81[ASN][1000 genomes]
rs4963931	0.81[ASN][1000 genomes]
rs4963933	0.81[ASN][1000 genomes]
rs4963935	0.81[ASN][1000 genomes]
rs55706441	0.94[ASN][1000 genomes]
rs55920249	0.81[ASN][1000 genomes]
rs57563237	0.96[ASN][1000 genomes]
rs73073022	0.81[ASN][1000 genomes]
rs73074805	0.84[ASN][1000 genomes]
rs73074809	1.00[ASN][1000 genomes]
rs73074810	1.00[ASN][1000 genomes]
rs73074813	1.00[ASN][1000 genomes]
rs73074823	0.81[ASN][1000 genomes]
rs73088153	0.81[ASN][1000 genomes]
rs73088172	0.81[ASN][1000 genomes]
rs7953605	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv976730	chr12:26082055-26086201	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26082800-26086200	Weak transcription	NHDF-Ad	bronchial
2	chr12:26082800-26086400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search: