Variant report

Variant	rs833893
Chromosome Location	chr19:38497962-38497963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10853715	0.95[EUR][1000 genomes]
rs1622543	0.95[EUR][1000 genomes]
rs1643455	0.95[EUR][1000 genomes]
rs1643456	0.95[EUR][1000 genomes]
rs1643457	0.89[EUR][1000 genomes]
rs1725501	0.94[EUR][1000 genomes]
rs1725503	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2694065	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57733318	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs705501	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs705502	0.92[EUR][1000 genomes]
rs833894	0.95[EUR][1000 genomes]
rs833901	0.92[EUR][1000 genomes]
rs833902	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs833903	0.93[EUR][1000 genomes]
rs833904	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs833905	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs833907	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs833908	0.89[EUR][1000 genomes]
rs833919	0.93[EUR][1000 genomes]
rs833920	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs833921	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38474800-38513600	Weak transcription	Gastric	stomach
2	chr19:38494600-38500200	Weak transcription	Thymus	Thymus
3	chr19:38494800-38500200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr19:38495000-38499200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr19:38495000-38500400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr19:38495200-38498800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:38495200-38501200	Enhancers	Primary B cells from cord blood	blood
8	chr19:38495200-38502400	Weak transcription	Pancreas	Pancrea
9	chr19:38495200-38503200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr19:38495400-38503800	Genic enhancers	Primary B cells from peripheral blood	blood
11	chr19:38495400-38522800	Weak transcription	Aorta	Aorta
12	chr19:38495400-38526400	Weak transcription	Ovary	ovary
13	chr19:38495600-38503000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr19:38495600-38509200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr19:38495600-38512800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr19:38495600-38513400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr19:38495600-38514200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr19:38495800-38510000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr19:38495800-38513400	Weak transcription	Stomach Mucosa	stomach
20	chr19:38496000-38505600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr19:38496200-38502400	Weak transcription	Lung	lung
22	chr19:38496200-38502800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr19:38496200-38503600	Weak transcription	Esophagus	oesophagus
24	chr19:38496200-38508000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr19:38496200-38508200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr19:38496200-38509400	Weak transcription	HSMMtube	muscle
27	chr19:38496200-38512600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr19:38496200-38513600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr19:38496200-38513600	Weak transcription	Left Ventricle	heart
30	chr19:38496200-38513600	Weak transcription	Right Ventricle	heart
31	chr19:38496200-38513600	Weak transcription	NHEK	skin
32	chr19:38496200-38521400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr19:38496400-38498600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr19:38496400-38499200	Weak transcription	Fetal Stomach	stomach
35	chr19:38496400-38502400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr19:38496400-38503000	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr19:38496400-38503000	Weak transcription	Brain Anterior Caudate	brain
38	chr19:38496400-38503000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr19:38496400-38503400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr19:38496400-38510800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr19:38496400-38511000	Weak transcription	Brain Germinal Matrix	brain
42	chr19:38496400-38521400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr19:38496600-38513600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr19:38496600-38515600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr19:38496800-38500000	Weak transcription	HSMM	muscle
46	chr19:38496800-38500600	Weak transcription	Fetal Muscle Leg	muscle
47	chr19:38496800-38506600	Weak transcription	Osteobl	bone
48	chr19:38496800-38509400	Weak transcription	HUVEC	blood vessel
49	chr19:38496800-38520600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr19:38497000-38500200	Weak transcription	Fetal Thymus	thymus

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