Variant report

Variant	rs833902
Chromosome Location	chr19:38486770-38486771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:38485452..38487493-chr19:38494216..38495870,2	MCF-7	breast:
2	chr19:38486249..38487777-chr19:38491320..38494076,2	K562	blood:
3	chr19:38485116..38487856-chr19:38494383..38496090,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10853715	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1622543	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1643455	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1643456	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1643457	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1643459	0.84[EUR][1000 genomes]
rs1725501	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1725503	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2694065	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57733318	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs705501	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs705502	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs833893	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs833894	0.95[EUR][1000 genomes]
rs833901	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs833903	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs833904	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs833905	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs833906	0.85[EUR][1000 genomes]
rs833907	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs833908	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs833919	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs833920	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs833921	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38461600-38493600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr19:38461600-38493600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr19:38470800-38494000	Weak transcription	Right Ventricle	heart
4	chr19:38471200-38493800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr19:38471400-38488600	Weak transcription	NHLF	lung
6	chr19:38472400-38493800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr19:38472800-38489600	Weak transcription	Fetal Kidney	kidney
8	chr19:38473200-38488600	Weak transcription	HSMMtube	muscle
9	chr19:38474800-38513600	Weak transcription	Gastric	stomach
10	chr19:38475000-38488600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr19:38475800-38488600	Weak transcription	Hela-S3	cervix
12	chr19:38477200-38488800	Weak transcription	Brain Anterior Caudate	brain
13	chr19:38477400-38491800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr19:38477600-38493800	Weak transcription	Thymus	Thymus
15	chr19:38479200-38493800	Weak transcription	Colonic Mucosa	Colon
16	chr19:38479800-38488600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr19:38479800-38489800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr19:38480000-38488600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr19:38480000-38493600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr19:38480000-38493600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr19:38480000-38493800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr19:38480200-38489800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr19:38481000-38493800	Weak transcription	Small Intestine	intestine
24	chr19:38482200-38493800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr19:38482400-38488400	Weak transcription	Fetal Muscle Leg	muscle
26	chr19:38482400-38489200	Weak transcription	Adipose Nuclei	Adipose
27	chr19:38482400-38489600	Weak transcription	Psoas Muscle	Psoas
28	chr19:38482400-38490600	Strong transcription	Fetal Intestine Small	intestine
29	chr19:38482400-38493600	Weak transcription	Brain Hippocampus Middle	brain
30	chr19:38482400-38493800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr19:38482400-38493800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr19:38482600-38488600	Weak transcription	Brain Angular Gyrus	brain
33	chr19:38482600-38493800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr19:38482600-38494000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr19:38482600-38494000	Weak transcription	Esophagus	oesophagus
36	chr19:38482800-38487600	Weak transcription	NHDF-Ad	bronchial
37	chr19:38482800-38489200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr19:38482800-38490200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr19:38482800-38493000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr19:38482800-38493400	Weak transcription	Stomach Mucosa	stomach
41	chr19:38483000-38487800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr19:38483000-38488400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr19:38483000-38488400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr19:38483000-38488600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr19:38483000-38488600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr19:38483000-38493600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr19:38483600-38488400	Weak transcription	NHEK	skin
48	chr19:38483600-38489000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr19:38483800-38488600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr19:38483800-38489800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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