Variant report
| Variant | rs834813 |
|---|---|
| Chromosome Location | chr7:135886783-135886784 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10225343 | 0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10264252 | 0.86[ASN][1000 genomes] |
| rs10278072 | 0.86[ASN][1000 genomes] |
| rs10278434 | 0.88[ASN][1000 genomes] |
| rs10954517 | 0.92[EUR][1000 genomes] |
| rs1097145 | 0.86[CEU][hapmap] |
| rs11771632 | 0.81[CEU][hapmap] |
| rs12533021 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12539683 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17243535 | 0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17243556 | 0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2081598 | 0.88[ASN][1000 genomes] |
| rs28447109 | 0.92[EUR][1000 genomes] |
| rs4732179 | 0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4732183 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4732184 | 0.86[ASN][1000 genomes] |
| rs4732186 | 0.81[ASN][1000 genomes] |
| rs6950690 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6975411 | 0.82[ASN][1000 genomes] |
| rs7779031 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs834801 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs834814 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv967498 | chr7:135874531-135896375 | Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 2 | nsv889236 | chr7:135884571-135943264 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:135886200-135897600 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
