Variant report

Variant	rs835902
Chromosome Location	chr1:57491376-57491377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57479613..57481966-chr1:57490580..57493279,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11811443	0.93[EUR][1000 genomes]
rs1342432	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17114796	0.96[EUR][1000 genomes]
rs17416642	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17416655	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17417626	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17449278	0.96[EUR][1000 genomes]
rs17450593	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17450764	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17451933	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs41286862	1.00[EUR][1000 genomes]
rs57172704	1.00[EUR][1000 genomes]
rs57655464	1.00[EUR][1000 genomes]
rs59236630	0.96[EUR][1000 genomes]
rs6698886	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6701615	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs706354	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs706355	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs706359	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs74077326	1.00[EUR][1000 genomes]
rs7514916	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs835446	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9651187	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv428752	chr1:57455083-57605082	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57483200-57494000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:57485200-57494800	Weak transcription	Fetal Brain Female	brain
3	chr1:57485400-57498000	Weak transcription	Liver	Liver
4	chr1:57486000-57502600	Weak transcription	Fetal Brain Male	brain
5	chr1:57487800-57498800	Weak transcription	Fetal Intestine Large	intestine
6	chr1:57489600-57491400	Enhancers	Brain Germinal Matrix	brain
7	chr1:57490000-57491400	Enhancers	Brain Substantia Nigra	brain
8	chr1:57490200-57491400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:57490200-57491600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:57490200-57491600	Enhancers	Stomach Smooth Muscle	stomach
11	chr1:57490200-57493000	Enhancers	Colon Smooth Muscle	Colon
12	chr1:57490400-57491400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:57490400-57491400	Enhancers	Brain Angular Gyrus	brain
14	chr1:57490400-57491400	Strong transcription	Fetal Intestine Small	intestine
15	chr1:57490600-57491400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:57490600-57491400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:57490600-57491400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:57490600-57491400	Enhancers	Brain Hippocampus Middle	brain
19	chr1:57490600-57492000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr1:57490800-57491800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr1:57490800-57491800	Enhancers	HepG2	liver
22	chr1:57491000-57491400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr1:57491000-57491400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr1:57491000-57491800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr1:57491000-57491800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:57491200-57491400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr1:57491200-57491400	Enhancers	Fetal Stomach	stomach
28	chr1:57491200-57493000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:57491200-57493200	Enhancers	NHEK	skin

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