Variant report

Variant	rs836527
Chromosome Location	chr7:6466671-6466672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:6466490-6466674	HepG2	liver:	n/a	n/a
2	POLR2A	chr7:6466490-6466781	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:6459143..6461711-chr7:6462987..6466871,3	K562	blood:

Variant related genes	Relation type
DAGLB	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13238780	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs702483	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs702485	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs702486	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73057348	1.00[ASN][1000 genomes]
rs836477	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs836478	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs836480	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs836483	0.86[ASN][1000 genomes]
rs836487	0.83[ASN][1000 genomes]
rs836494	0.82[ASN][1000 genomes]
rs836498	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs836499	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs836503	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs836508	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs836509	0.84[EUR][1000 genomes]
rs836513	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs836516	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs836521	0.82[EUR][1000 genomes]
rs836526	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs836529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs836534	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs836536	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs836539	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs836549	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs836551	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs836556	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs836558	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs836559	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs861369	0.83[ASN][1000 genomes]
rs866278	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
7	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv497874	chr7:6296768-6614902	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv605999	chr7:6396719-6472881	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	esv1824738	chr7:6431933-6554222	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	esv1825865	chr7:6431933-6554222	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv606000	chr7:6446027-6477002	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs836527	RAC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6426000-6475600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:6437600-6470400	Strong transcription	Fetal Brain Female	brain
3	chr7:6438600-6475600	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:6439600-6472400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:6439800-6474600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:6439800-6474600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:6439800-6477400	Strong transcription	Fetal Intestine Small	intestine
8	chr7:6441200-6471400	Strong transcription	Brain Germinal Matrix	brain
9	chr7:6443800-6475000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr7:6444000-6474600	Strong transcription	Lung	lung
11	chr7:6448600-6470000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:6450400-6475000	Strong transcription	Fetal Stomach	stomach
13	chr7:6452800-6475000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr7:6453000-6486800	Weak transcription	Small Intestine	intestine
15	chr7:6453600-6483200	Weak transcription	Fetal Kidney	kidney
16	chr7:6456600-6475200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr7:6456800-6486800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr7:6457800-6474800	Strong transcription	Thymus	Thymus
19	chr7:6458800-6467600	Strong transcription	Ovary	ovary
20	chr7:6458800-6469200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:6458800-6474800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:6458800-6474800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:6458800-6474800	Strong transcription	Fetal Intestine Large	intestine
24	chr7:6459000-6467600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:6459000-6469400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:6459000-6471000	Strong transcription	Dnd41	blood
27	chr7:6459000-6472000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr7:6459000-6474400	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr7:6459000-6474600	Strong transcription	Duodenum Mucosa	Duodenum
30	chr7:6459000-6474800	Strong transcription	Primary T cells from cord blood	blood
31	chr7:6459200-6467400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:6459600-6469400	Strong transcription	Osteobl	bone
33	chr7:6459600-6474800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:6459600-6478400	Weak transcription	Psoas Muscle	Psoas
35	chr7:6460000-6469200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
36	chr7:6460000-6469200	Strong transcription	Primary hematopoietic stem cells	blood
37	chr7:6460000-6471000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr7:6460200-6469600	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr7:6460400-6469200	Strong transcription	Placenta Amnion	Placenta Amnion
40	chr7:6460800-6473600	Weak transcription	Fetal Brain Male	brain
41	chr7:6460800-6474600	Strong transcription	Fetal Muscle Leg	muscle
42	chr7:6461400-6468800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr7:6461600-6469600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:6461800-6478000	Weak transcription	HUVEC	blood vessel
45	chr7:6462200-6470000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:6462200-6475400	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr7:6462400-6467000	Strong transcription	NH-A	brain
48	chr7:6462400-6470000	Weak transcription	K562	blood
49	chr7:6462600-6472000	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr7:6462600-6475000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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