Variant report

Variant rs842457
Chromosome Location chr3:195537400-195537401
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:195530200-195541400 Weak transcription Right Atrium heart
2 chr3:195531000-195537800 Enhancers H1 Cell Line embryonic stem cell
3 chr3:195531800-195538400 Weak transcription Fetal Intestine Small intestine
4 chr3:195532400-195538600 Weak transcription Gastric stomach
5 chr3:195532400-195538600 Weak transcription Pancreas Pancrea
6 chr3:195533000-195537600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
7 chr3:195534800-195537400 Weak transcription HUES48 Cell Line embryonic stem cell
8 chr3:195534800-195539200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
9 chr3:195535000-195538400 Weak transcription ES-WA7 Cell Line embryonic stem cell
10 chr3:195535600-195537600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr3:195535600-195537800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr3:195536000-195537400 Enhancers HSMM muscle
13 chr3:195536000-195538000 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
14 chr3:195536000-195539000 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
15 chr3:195536200-195538600 Weak transcription Esophagus oesophagus
16 chr3:195536400-195537600 Bivalent Enhancer Fetal Muscle Trunk muscle
17 chr3:195536400-195538800 Active TSS Sigmoid Colon Sigmoid Colon
18 chr3:195536400-195539200 Active TSS Rectal Mucosa Donor 29 rectum
19 chr3:195536400-195542200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr3:195536600-195537600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr3:195536600-195538600 Enhancers HUES64 Cell Line embryonic stem cell
22 chr3:195536600-195538800 Active TSS Rectal Smooth Muscle rectum
23 chr3:195536600-195539000 Active TSS Rectal Mucosa Donor 31 rectum
24 chr3:195536800-195538000 Active TSS Small Intestine intestine
25 chr3:195537000-195537600 Weak transcription H9 Cell Line embryonic stem cell
26 chr3:195537200-195537400 Flanking Active TSS ES-I3 Cell Line embryonic stem cell
27 chr3:195537200-195537400 Flanking Active TSS Colonic Mucosa Colon
28 chr3:195537200-195537400 Flanking Active TSS Placenta Amnion Placenta Amnion
29 chr3:195537200-195537600 Enhancers iPS-15b Cell Line embryonic stem cell
30 chr3:195537200-195537600 Bivalent Enhancer Fetal Muscle Leg muscle
31 chr3:195537200-195537600 Flanking Bivalent TSS/Enh Placenta Placenta
32 chr3:195537200-195537800 Flanking Active TSS HUES6 Cell Line embryonic stem cell
33 chr3:195537200-195537800 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
34 chr3:195537200-195538000 Enhancers iPS-20b Cell Line embryonic stem cell
35 chr3:195537400-195537600 Active TSS ES-I3 Cell Line embryonic stem cell
36 chr3:195537400-195537600 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin
37 chr3:195537400-195537600 Flanking Bivalent TSS/Enh Foreskin Fibroblast Primary Cells skin02 Skin
38 chr3:195537400-195537600 Bivalent Enhancer Foreskin Melanocyte Primary Cells skin01 Skin
39 chr3:195537400-195537800 Enhancers HUES48 Cell Line embryonic stem cell
40 chr3:195537400-195537800 Transcr. at gene 5' and 3' Colonic Mucosa Colon
41 chr3:195537400-195539000 Active TSS Placenta Amnion Placenta Amnion

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