Variant report
| Variant | rs843260 |
|---|---|
| Chromosome Location | chr9:105608503-105608504 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:105606535..105608555-chr9:105610541..105613009,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10512306 | 0.90[ASN][1000 genomes] |
| rs10990347 | 0.93[ASN][1000 genomes] |
| rs10990357 | 0.93[ASN][1000 genomes] |
| rs10990358 | 0.97[ASN][1000 genomes] |
| rs10990359 | 1.00[ASN][1000 genomes] |
| rs10990361 | 0.97[ASN][1000 genomes] |
| rs1418780 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs16922210 | 0.93[ASN][1000 genomes] |
| rs16922216 | 0.93[ASN][1000 genomes] |
| rs2812591 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4742862 | 0.95[ASN][1000 genomes] |
| rs7023672 | 1.00[ASN][1000 genomes] |
| rs7040321 | 0.95[ASN][1000 genomes] |
| rs843262 | 0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs843263 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs843264 | 0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs843265 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs843269 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs843270 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047080 | chr9:105432479-105658235 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv540185 | chr9:105432479-105658235 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1054263 | chr9:105570212-105754741 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv893655 | chr9:105583926-105620803 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv430086 | chr9:105585487-105632182 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv1054932 | chr9:105585667-105646429 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv1053435 | chr9:105594399-105733795 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:105607400-105608600 | Enhancers | Rectal Mucosa Donor 31 | rectum |
| 2 | chr9:105607800-105608800 | Weak transcription | Duodenum Mucosa | Duodenum |
