Variant report

Variant	rs843399
Chromosome Location	chr2:116185335-116185336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11674650	0.93[ASN][1000 genomes]
rs11675299	0.94[ASN][1000 genomes]
rs11675990	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11680996	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11683441	0.90[ASN][1000 genomes]
rs12476869	0.92[ASN][1000 genomes]
rs12614808	0.87[ASN][1000 genomes]
rs12711825	0.93[ASN][1000 genomes]
rs13010997	0.94[ASN][1000 genomes]
rs13016837	0.94[ASN][1000 genomes]
rs13021167	0.91[ASN][1000 genomes]
rs1517369	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1517370	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1517372	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1521076	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1521079	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1589084	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1589085	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1589086	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1626545	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1711995	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1712012	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1717037	0.91[ASN][1000 genomes]
rs1717038	0.91[ASN][1000 genomes]
rs1717045	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1717047	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1717055	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1829229	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2030440	0.89[ASN][1000 genomes]
rs2030441	0.89[ASN][1000 genomes]
rs2138776	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2677290	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2683794	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34790955	0.92[ASN][1000 genomes]
rs34825131	0.94[ASN][1000 genomes]
rs35275337	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56280083	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60118669	0.86[ASN][1000 genomes]
rs62164391	0.92[ASN][1000 genomes]
rs62166081	0.94[ASN][1000 genomes]
rs6542260	0.88[ASN][1000 genomes]
rs708647	0.86[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap]
rs708649	0.86[ASN][1000 genomes]
rs843381	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs843388	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs843391	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs843395	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs843398	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs843405	0.86[ASN][1000 genomes]
rs843412	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs952747	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs843399	TMEM87B	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116183400-116185400	ZNF genes & repeats	Fetal Intestine Small	intestine
2	chr2:116184200-116185400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:116184200-116186400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:116184400-116185800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr2:116184600-116185400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr2:116184800-116186200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:116185200-116185400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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