Variant report

Variant	rs708649
Chromosome Location	chr2:116202586-116202587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1037205	0.86[ASN][1000 genomes]
rs10496494	0.83[ASN][1000 genomes]
rs11123306	0.85[ASN][1000 genomes]
rs11123307	0.86[ASN][1000 genomes]
rs11674650	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11675299	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11675990	0.88[ASN][1000 genomes]
rs11680996	0.88[ASN][1000 genomes]
rs11683441	0.88[ASN][1000 genomes]
rs11690107	0.81[ASN][1000 genomes]
rs12476869	0.93[ASN][1000 genomes]
rs12614808	0.90[ASN][1000 genomes]
rs12711825	0.90[ASN][1000 genomes]
rs12990043	0.85[ASN][1000 genomes]
rs13002613	0.81[ASN][1000 genomes]
rs13010997	0.91[ASN][1000 genomes]
rs13016837	0.91[ASN][1000 genomes]
rs13021167	0.93[ASN][1000 genomes]
rs1375144	0.83[ASN][1000 genomes]
rs1517369	0.88[ASN][1000 genomes]
rs1517370	0.91[ASN][1000 genomes]
rs1517372	0.85[ASN][1000 genomes]
rs1521076	0.84[ASN][1000 genomes]
rs1521079	0.88[ASN][1000 genomes]
rs1530689	0.82[ASN][1000 genomes]
rs1589084	0.88[ASN][1000 genomes]
rs1589085	0.88[ASN][1000 genomes]
rs1589086	0.88[ASN][1000 genomes]
rs1597189	0.82[ASN][1000 genomes]
rs1597193	0.85[ASN][1000 genomes]
rs1626545	0.88[ASN][1000 genomes]
rs1711995	0.85[ASN][1000 genomes]
rs1712000	0.83[ASN][1000 genomes]
rs1712002	0.85[ASN][1000 genomes]
rs1712012	0.85[ASN][1000 genomes]
rs1717037	0.93[ASN][1000 genomes]
rs1717038	0.93[ASN][1000 genomes]
rs1717045	0.88[ASN][1000 genomes]
rs1717047	0.84[ASN][1000 genomes]
rs1717055	0.89[ASN][1000 genomes]
rs1829229	0.88[ASN][1000 genomes]
rs2030440	0.96[ASN][1000 genomes]
rs2030441	0.96[ASN][1000 genomes]
rs2121998	0.85[ASN][1000 genomes]
rs2138776	0.86[ASN][1000 genomes]
rs2677290	0.85[ASN][1000 genomes]
rs2683794	0.86[ASN][1000 genomes]
rs34790955	0.93[ASN][1000 genomes]
rs34825131	0.91[ASN][1000 genomes]
rs35275337	0.86[ASN][1000 genomes]
rs35444272	0.82[EUR][1000 genomes]
rs4383330	0.82[ASN][1000 genomes]
rs4849398	0.82[ASN][1000 genomes]
rs56280083	0.86[ASN][1000 genomes]
rs60118669	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62164391	0.93[ASN][1000 genomes]
rs62166081	0.91[ASN][1000 genomes]
rs6542260	0.90[ASN][1000 genomes]
rs6732466	0.85[ASN][1000 genomes]
rs843381	0.88[ASN][1000 genomes]
rs843388	0.88[ASN][1000 genomes]
rs843391	0.86[ASN][1000 genomes]
rs843395	0.84[ASN][1000 genomes]
rs843398	0.88[ASN][1000 genomes]
rs843399	0.86[ASN][1000 genomes]
rs843405	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843408	0.91[ASN][1000 genomes]
rs843412	0.91[ASN][1000 genomes]
rs950586	0.82[EUR][1000 genomes]
rs952747	0.90[ASN][1000 genomes]
rs965536	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116196600-116203400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:116196800-116203400	Weak transcription	Pancreas	Pancrea
3	chr2:116201600-116204600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr2:116201600-116205000	Weak transcription	Fetal Brain Male	brain
5	chr2:116201800-116203400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:116202200-116205000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:116202400-116204000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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