Variant report

Variant	rs844822
Chromosome Location	chr20:23082641-23082642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23080110..23082822-chr20:23132025..23133564,2	K562	blood:
2	chr20:23080717..23083720-chr20:23084515..23087690,4	K562	blood:
3	chr20:23074883..23076456-chr20:23081289..23084171,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs17756373	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1856471	0.84[EUR][1000 genomes]
rs34151880	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34290000	0.82[EUR][1000 genomes]
rs4446126	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036310	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048544	0.81[EUR][1000 genomes]
rs6048545	0.81[EUR][1000 genomes]
rs6048546	0.80[EUR][1000 genomes]
rs6048548	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6048549	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6076024	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6076025	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6076026	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6076027	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6083006	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62202612	0.86[EUR][1000 genomes]
rs699794	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs699795	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844814	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs844815	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844816	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs844817	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844819	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844823	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844827	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs844828	0.97[ASN][1000 genomes]
rs844829	0.97[ASN][1000 genomes]
rs844830	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs844831	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs844846	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs844850	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs844851	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844852	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844853	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844854	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844855	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs844856	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844857	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844860	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844861	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844862	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844863	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844864	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844865	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844866	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2762066	chr20:23082036-23092700	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23072800-23092000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23073000-23087000	Weak transcription	Gastric	stomach
3	chr20:23073800-23085800	Weak transcription	Right Ventricle	heart
4	chr20:23074600-23083000	Weak transcription	Right Atrium	heart
5	chr20:23075000-23083000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr20:23075000-23085600	Weak transcription	Fetal Lung	lung
7	chr20:23077400-23084800	Enhancers	Placenta	Placenta
8	chr20:23079000-23084400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr20:23079200-23083400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr20:23079800-23083400	Enhancers	Esophagus	oesophagus
11	chr20:23081000-23082800	Weak transcription	Spleen	Spleen
12	chr20:23081000-23085800	Weak transcription	Fetal Thymus	thymus
13	chr20:23081000-23086400	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr20:23081400-23083000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr20:23081600-23085800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr20:23082000-23089000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr20:23082200-23083200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr20:23082200-23083400	Weak transcription	HMEC	breast
19	chr20:23082200-23083400	Weak transcription	NHEK	skin
20	chr20:23082200-23083800	Enhancers	Fetal Muscle Trunk	muscle
21	chr20:23082400-23083200	Enhancers	Fetal Stomach	stomach
22	chr20:23082400-23083800	Enhancers	Left Ventricle	heart
23	chr20:23082400-23083800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr20:23082400-23084600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr20:23082400-23086200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr20:23082400-23088400	Enhancers	Adipose Nuclei	Adipose
27	chr20:23082400-23088400	Enhancers	HUVEC	blood vessel
28	chr20:23082400-23088800	Enhancers	Fetal Muscle Leg	muscle
29	chr20:23082600-23083200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr20:23082600-23083400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr20:23082600-23083400	Enhancers	Lung	lung
32	chr20:23082600-23083800	Enhancers	Primary B cells from cord blood	blood

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