Variant report

Variant	rs844827
Chromosome Location	chr20:23084610-23084611
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23064609..23066913-chr20:23084404..23086526,2	K562	blood:
2	chr20:23080717..23083720-chr20:23084515..23087690,4	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1338945	0.90[CHB][hapmap]
rs17756373	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1856471	0.84[EUR][1000 genomes]
rs34151880	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34290000	0.82[EUR][1000 genomes]
rs4446126	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6036310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6048544	0.81[EUR][1000 genomes]
rs6048545	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs6048546	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs6048548	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048549	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076024	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6076025	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6076026	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6076027	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083006	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62202612	0.86[EUR][1000 genomes]
rs699794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs699795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844814	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs844815	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs844816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs844817	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs844819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs844821	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs844822	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs844823	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs844825	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs844828	1.00[ASN][1000 genomes]
rs844829	1.00[ASN][1000 genomes]
rs844830	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844831	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs844846	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs844850	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs844851	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844852	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844853	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844854	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs844856	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844860	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844861	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844862	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844863	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844864	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844865	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844866	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2762066	chr20:23082036-23092700	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23072800-23092000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23073000-23087000	Weak transcription	Gastric	stomach
3	chr20:23073800-23085800	Weak transcription	Right Ventricle	heart
4	chr20:23075000-23085600	Weak transcription	Fetal Lung	lung
5	chr20:23077400-23084800	Enhancers	Placenta	Placenta
6	chr20:23081000-23085800	Weak transcription	Fetal Thymus	thymus
7	chr20:23081000-23086400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr20:23081600-23085800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr20:23082000-23089000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr20:23082400-23086200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr20:23082400-23088400	Enhancers	Adipose Nuclei	Adipose
12	chr20:23082400-23088400	Enhancers	HUVEC	blood vessel
13	chr20:23082400-23088800	Enhancers	Fetal Muscle Leg	muscle
14	chr20:23082800-23084800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr20:23082800-23086600	Enhancers	Spleen	Spleen
16	chr20:23083200-23084800	Enhancers	Primary hematopoietic stem cells	blood
17	chr20:23083400-23085000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr20:23083400-23085200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr20:23083400-23087200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr20:23083600-23086200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr20:23084200-23085200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr20:23084200-23086800	Enhancers	Primary B cells from cord blood	blood
23	chr20:23084200-23088400	Enhancers	Left Ventricle	heart
24	chr20:23084400-23085200	Enhancers	Brain Hippocampus Middle	brain
25	chr20:23084400-23085200	Enhancers	Right Atrium	heart
26	chr20:23084400-23086200	Enhancers	Esophagus	oesophagus
27	chr20:23084400-23088400	Enhancers	Fetal Muscle Trunk	muscle
28	chr20:23084400-23088400	Enhancers	Lung	lung
29	chr20:23084400-23089000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr20:23084600-23085800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr20:23084600-23086800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr20:23084600-23087200	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links