Variant report

Variant	rs844916
Chromosome Location	chr20:23141615-23141616
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:23140388-23143255	MCF10A-Er-Src	breast:	n/a	n/a
2	E2F4	chr20:23141416-23141693	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr20:23141250-23141633	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr20:23141140-23143230	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RNA5SP478	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs844915	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1066935	chr20:23123507-23146449	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv912817	chr20:23127661-23240969	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23121000-23144200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr20:23121800-23143000	Enhancers	NHDF-Ad	bronchial
3	chr20:23127200-23142200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr20:23133800-23144000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr20:23134600-23143400	Enhancers	NHEK	skin
6	chr20:23135600-23143200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr20:23136200-23142200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr20:23137000-23141800	Weak transcription	Pancreas	Pancrea
9	chr20:23137200-23143400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr20:23137400-23141800	Enhancers	Hela-S3	cervix
11	chr20:23137600-23142800	Weak transcription	Gastric	stomach
12	chr20:23137600-23144800	Weak transcription	Ovary	ovary
13	chr20:23138400-23143000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr20:23138400-23146400	Enhancers	Placenta	Placenta
15	chr20:23138600-23143000	Enhancers	HUVEC	blood vessel
16	chr20:23138600-23144000	Enhancers	Spleen	Spleen
17	chr20:23138800-23143400	Enhancers	Fetal Thymus	thymus
18	chr20:23139200-23142800	Enhancers	NHLF	lung
19	chr20:23139200-23143000	Enhancers	Primary hematopoietic stem cells	blood
20	chr20:23139200-23143000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr20:23139200-23143600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr20:23139200-23143800	Enhancers	Psoas Muscle	Psoas
23	chr20:23139400-23142800	Enhancers	Primary T cells from cord blood	blood
24	chr20:23139400-23143200	Enhancers	GM12878-XiMat	blood
25	chr20:23139400-23143800	Enhancers	Primary B cells from cord blood	blood
26	chr20:23139400-23144000	Enhancers	Right Atrium	heart
27	chr20:23139400-23145200	Enhancers	Left Ventricle	heart
28	chr20:23139400-23146600	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr20:23139600-23143000	Enhancers	Thymus	Thymus
30	chr20:23139600-23143200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr20:23139800-23141800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr20:23139800-23141800	Enhancers	Fetal Stomach	stomach
33	chr20:23139800-23142000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr20:23139800-23142000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr20:23139800-23142200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr20:23139800-23142200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr20:23139800-23142600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr20:23139800-23143400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr20:23139800-23143400	Enhancers	HMEC	breast
40	chr20:23139800-23143800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr20:23139800-23145200	Enhancers	Lung	lung
42	chr20:23139800-23146400	Enhancers	Fetal Muscle Leg	muscle
43	chr20:23139800-23146600	Enhancers	Stomach Mucosa	stomach
44	chr20:23140000-23142200	Enhancers	Small Intestine	intestine
45	chr20:23140400-23141800	Enhancers	Brain Substantia Nigra	brain
46	chr20:23140400-23142000	Enhancers	Fetal Lung	lung
47	chr20:23140400-23142200	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr20:23140400-23142200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr20:23140400-23142600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr20:23140400-23143000	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links