Variant report

Variant	rs846908
Chromosome Location	chr1:209858453-209858454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209856965..209858712-chr1:209859534..209861153,2	K562	blood:

Variant related genes	Relation type
ENSG00000117594	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10082248	1.00[CEU][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10863780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12561766	1.00[CEU][hapmap]
rs17015078	1.00[CEU][hapmap]
rs1883442	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2038053	1.00[CEU][hapmap]
rs2236902	1.00[CEU][hapmap]
rs2272866	1.00[CEU][hapmap]
rs2282740	1.00[CEU][hapmap]
rs2298930	1.00[CEU][hapmap]
rs4329516	1.00[CEU][hapmap]
rs4545339	1.00[CEU][hapmap]
rs4844881	0.88[AMR][1000 genomes]
rs4844893	1.00[CEU][hapmap]
rs4844894	1.00[CEU][hapmap]
rs6540547	1.00[CEU][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6694238	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs701950	1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes]
rs7528642	1.00[CEU][hapmap]
rs7528902	0.83[ASN][1000 genomes]
rs846910	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs860184	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209849600-209861400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:209849800-209862000	Weak transcription	NHLF	lung
3	chr1:209850000-209859200	Weak transcription	Left Ventricle	heart
4	chr1:209850800-209859000	Weak transcription	Fetal Lung	lung
5	chr1:209851000-209858800	Weak transcription	Fetal Heart	heart
6	chr1:209851600-209858800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:209856400-209859000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:209857400-209858600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:209857400-209859000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:209857400-209859000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:209857400-209860600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr1:209857400-209861400	Weak transcription	HMEC	breast
13	chr1:209857600-209859200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr1:209857800-209859000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr1:209858200-209858600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr1:209858200-209858800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:209858400-209859000	Enhancers	Primary T cells from cord blood	blood
18	chr1:209858400-209859200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr1:209858400-209860600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr1:209858400-209860600	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr1:209858400-209860800	Enhancers	Ovary	ovary

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