The 2.0 version of rSNPBase

Variant report

Variant rs4844893
Chromosome Location chr1:209930678-209930679
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:209921800-209940800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:209921800-209942000 Weak transcription Pancreas Pancrea
3 chr1:209922400-209931200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:209928600-209932000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
5 chr1:209928600-209932200 Flanking Active TSS GM12878-XiMat blood
6 chr1:209928800-209931000 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
7 chr1:209928800-209932200 Flanking Active TSS Primary neutrophils fromperipheralblood blood
8 chr1:209928800-209932400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
9 chr1:209929000-209931200 Flanking Active TSS Primary B cells from cord blood blood
10 chr1:209929000-209931800 Active TSS Duodenum Mucosa Duodenum
11 chr1:209929000-209932000 Flanking Active TSS Primary T helper cells fromperipheralblood blood
12 chr1:209929000-209932200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr1:209929000-209932200 Active TSS Rectal Mucosa Donor 29 rectum
14 chr1:209929000-209932400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr1:209929000-209932800 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
16 chr1:209929200-209930800 Active TSS Primary T cells from cord blood blood
17 chr1:209929200-209931200 Flanking Active TSS Primary B cells from peripheral blood blood
18 chr1:209929200-209931400 Flanking Active TSS Primary Natural Killer cells fromperipheralblood blood
19 chr1:209929200-209931400 Active TSS Primary T killer naive cells fromperipheralblood blood
20 chr1:209929400-209930800 Active TSS Fetal Thymus thymus
21 chr1:209929400-209931000 Active TSS Primary T cells fromperipheralblood blood
22 chr1:209929400-209931000 Active TSS Liver Liver
23 chr1:209929400-209931000 Active TSS Rectal Mucosa Donor 31 rectum
24 chr1:209929400-209931200 Active TSS Primary T helper memory cells from peripheral blood 2 blood
25 chr1:209929400-209931200 Active TSS Primary T helper naive cells from peripheral blood blood
26 chr1:209929400-209931200 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
27 chr1:209929400-209931400 Flanking Active TSS Primary monocytes fromperipheralblood blood
28 chr1:209929400-209931400 Active TSS Primary T killer memory cells from peripheral blood blood
29 chr1:209929400-209931400 Active TSS Colonic Mucosa Colon
30 chr1:209929400-209931800 Flanking Active TSS Primary hematopoietic stem cells blood
31 chr1:209929400-209931800 Active TSS Rectal Smooth Muscle rectum
32 chr1:209929600-209930800 Active TSS Small Intestine intestine
33 chr1:209929600-209931000 Active TSS Esophagus oesophagus
34 chr1:209929600-209931000 Active TSS Spleen Spleen
35 chr1:209929600-209931200 Active TSS Duodenum Smooth Muscle Duodenum
36 chr1:209929600-209931400 Active TSS Sigmoid Colon Sigmoid Colon
37 chr1:209929800-209930800 Enhancers Fetal Heart heart
38 chr1:209929800-209930800 Active TSS Fetal Intestine Large intestine
39 chr1:209930200-209931000 Active TSS Gastric stomach
40 chr1:209930200-209932600 Weak transcription Right Ventricle heart
41 chr1:209930200-209934600 Weak transcription Right Atrium heart
42 chr1:209930200-209935000 Transcr. at gene 5' and 3' Primary T helper naive cells fromperipheralblood blood
43 chr1:209930400-209931000 Active TSS Adipose Nuclei Adipose
44 chr1:209930400-209931000 Active TSS Fetal Muscle Leg muscle
45 chr1:209930400-209931600 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
46 chr1:209930400-209931800 Transcr. at gene 5' and 3' Dnd41 blood
47 chr1:209930400-209932200 Flanking Active TSS Thymus Thymus
48 chr1:209930600-209930800 Active TSS Primary T helper memory cells from peripheral blood 1 blood
49 chr1:209930600-209930800 Active TSS Primary T regulatory cells fromperipheralblood blood
50 chr1:209930600-209930800 Enhancers Fetal Intestine Small intestine

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Last update: Aug 31, 2015