The 2.0 version of rSNPBase

Variant report

Variant rs2076149
Chromosome Location chr1:209933528-209933529
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:209921800-209940800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:209921800-209942000 Weak transcription Pancreas Pancrea
3 chr1:209930200-209934600 Weak transcription Right Atrium heart
4 chr1:209930200-209935000 Transcr. at gene 5' and 3' Primary T helper naive cells fromperipheralblood blood
5 chr1:209930800-209938800 Weak transcription Fetal Intestine Large intestine
6 chr1:209931000-209941800 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr1:209931000-209942000 Weak transcription Esophagus oesophagus
8 chr1:209931000-209943200 Weak transcription Lung lung
9 chr1:209931000-209943600 Weak transcription Gastric stomach
10 chr1:209931200-209933800 Transcr. at gene 5' and 3' Primary T helper naive cells from peripheral blood blood
11 chr1:209931600-209933800 Enhancers Fetal Muscle Leg muscle
12 chr1:209931800-209935400 Transcr. at gene 5' and 3' Primary T cells from cord blood blood
13 chr1:209931800-209935800 Genic enhancers Primary B cells from peripheral blood blood
14 chr1:209931800-209940600 Weak transcription Rectal Smooth Muscle rectum
15 chr1:209932000-209933600 Transcr. at gene 5' and 3' Primary T helper cells fromperipheralblood blood
16 chr1:209932000-209933800 Transcr. at gene 5' and 3' Monocytes-CD14+_RO01746 blood
17 chr1:209932000-209935200 Transcr. at gene 5' and 3' Primary T regulatory cells fromperipheralblood blood
18 chr1:209932000-209936800 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
19 chr1:209932200-209933600 Transcr. at gene 5' and 3' Primary T helper memory cells from peripheral blood 2 blood
20 chr1:209932200-209934400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr1:209932200-209934800 Genic enhancers GM12878-XiMat blood
22 chr1:209932200-209935400 Genic enhancers Fetal Thymus thymus
23 chr1:209932200-209941200 Genic enhancers Primary monocytes fromperipheralblood blood
24 chr1:209932200-209941400 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr1:209932200-209941800 Weak transcription Colonic Mucosa Colon
26 chr1:209932200-209942000 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr1:209932600-209933600 Enhancers Right Ventricle heart
28 chr1:209932600-209933800 Genic enhancers Spleen Spleen
29 chr1:209932600-209934800 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr1:209932600-209935400 Genic enhancers Primary neutrophils fromperipheralblood blood
31 chr1:209932600-209936000 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
32 chr1:209932600-209937800 Strong transcription Dnd41 blood
33 chr1:209932600-209940000 Genic enhancers Primary T helper memory cells from peripheral blood 1 blood
34 chr1:209932800-209934200 Strong transcription Primary hematopoietic stem cells blood
35 chr1:209932800-209935200 Genic enhancers Primary B cells from cord blood blood
36 chr1:209932800-209938000 Genic enhancers Primary T killer naive cells fromperipheralblood blood
37 chr1:209932800-209939400 Strong transcription Primary hematopoietic stem cells short term culture blood
38 chr1:209933000-209933600 Enhancers Psoas Muscle Psoas
39 chr1:209933000-209933800 Strong transcription Fetal Intestine Small intestine
40 chr1:209933000-209937800 Genic enhancers Primary T killer memory cells from peripheral blood blood
41 chr1:209933000-209940000 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
42 chr1:209933000-209940800 Genic enhancers Primary T cells fromperipheralblood blood
43 chr1:209933200-209933600 Flanking Active TSS Skeletal Muscle Female skeletal muscle
44 chr1:209933200-209933800 Enhancers Fetal Muscle Trunk muscle
45 chr1:209933200-209936200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr1:209933200-209939400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr1:209933200-209939400 Weak transcription Duodenum Mucosa Duodenum
48 chr1:209933400-209933800 Flanking Active TSS Skeletal Muscle Male skeletal muscle
49 chr1:209933400-209934600 Weak transcription Fetal Heart heart
50 chr1:209933400-209934600 Enhancers Left Ventricle heart

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Last update: Aug 31, 2015