Variant report

Variant	rs847858
Chromosome Location	chr6:34935461-34935462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34927133..34929611-chr6:34935086..34937533,2	K562	blood:
2	chr6:34914307..34916532-chr6:34932966..34936178,3	K562	blood:
3	chr6:34855008..34857070-chr6:34934227..34936137,2	K562	blood:

Variant related genes	Relation type
ENSG00000064999	Chromatin interaction
ENSG00000064995	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1535001	0.85[JPT][hapmap]
rs2689091	0.85[JPT][hapmap]
rs2820223	0.85[JPT][hapmap]
rs2820232	0.94[JPT][hapmap]
rs2820233	0.90[JPT][hapmap]
rs2820237	0.85[JPT][hapmap]
rs3817473	0.81[JPT][hapmap]
rs3823438	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs847846	0.80[JPT][hapmap]
rs847850	0.86[JPT][hapmap]
rs847851	0.85[JPT][hapmap]
rs847852	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs847859	0.81[JPT][hapmap]
rs864037	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1026121	chr6:34786887-34961360	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1033135	chr6:34802652-34957093	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv508402	chr6:34840961-34951288	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv5257	chr6:34925313-34970101	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34895800-34949200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:34904600-34937400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:34907400-34937600	Weak transcription	Dnd41	blood
4	chr6:34918600-34938400	Weak transcription	Thymus	Thymus
5	chr6:34919800-34937200	Weak transcription	NHEK	skin
6	chr6:34920000-34937400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:34920000-34937400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:34920400-34958600	Weak transcription	Colonic Mucosa	Colon
9	chr6:34921200-34937600	Weak transcription	Aorta	Aorta
10	chr6:34921200-34949400	Weak transcription	Esophagus	oesophagus
11	chr6:34921400-34937400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:34921600-34937600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:34921600-34937800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:34921600-34949400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:34921800-34938800	Weak transcription	HMEC	breast
16	chr6:34922000-34953800	Weak transcription	Hela-S3	cervix
17	chr6:34922200-34937400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:34922600-34937400	Weak transcription	HepG2	liver
19	chr6:34922600-34940200	Weak transcription	A549	lung
20	chr6:34922600-34940800	Weak transcription	Stomach Mucosa	stomach
21	chr6:34922800-34937400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:34922800-34950200	Weak transcription	Brain Germinal Matrix	brain
23	chr6:34923600-34936800	Weak transcription	K562	blood
24	chr6:34923800-34937400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:34925000-34937400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:34925200-34937200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:34925600-34984800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr6:34925800-34937800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:34926000-34937600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:34926000-34937600	Weak transcription	Fetal Lung	lung
31	chr6:34926000-34937600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr6:34926600-34937400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:34926600-34937600	Weak transcription	Liver	Liver
34	chr6:34926600-34937800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:34926800-34937800	Weak transcription	Brain Angular Gyrus	brain
36	chr6:34926800-34992200	Weak transcription	Small Intestine	intestine
37	chr6:34927000-34937200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr6:34927000-34937400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:34927000-34937600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:34927000-34937600	Weak transcription	Fetal Intestine Large	intestine
41	chr6:34927000-34937800	Weak transcription	Gastric	stomach
42	chr6:34927200-34937400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:34927200-34937600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr6:34927200-34952200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:34928000-34938000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:34928400-34949400	Weak transcription	Pancreas	Pancrea
47	chr6:34928600-34937800	Weak transcription	Lung	lung
48	chr6:34928800-34937800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:34929000-34937600	Weak transcription	Brain Substantia Nigra	brain
50	chr6:34929200-34937800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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