Variant report

Variant	rs852759
Chromosome Location	chr1:58284236-58284237
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10889075	0.87[JPT][hapmap]
rs11207128	0.87[JPT][hapmap]
rs11587998	0.87[JPT][hapmap]
rs12034235	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12117610	0.87[JPT][hapmap]
rs12402927	0.87[JPT][hapmap]
rs1408141	0.88[EUR][1000 genomes]
rs1570595	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1570596	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17519861	0.87[JPT][hapmap]
rs17519924	0.87[JPT][hapmap]
rs17579464	0.87[JPT][hapmap]
rs1884486	0.81[JPT][hapmap]
rs1886142	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1936407	0.81[JPT][hapmap]
rs2207986	0.87[JPT][hapmap]
rs6670853	0.87[JPT][hapmap]
rs6698015	0.95[EUR][1000 genomes]
rs852749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs852753	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs852760	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs852764	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs852765	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs852766	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs852767	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs852771	1.00[JPT][hapmap]
rs852773	0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs852776	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs852777	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs852780	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs852781	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs852783	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs852786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs852788	0.90[JPT][hapmap]
rs852790	0.89[JPT][hapmap]
rs852791	1.00[JPT][hapmap]
rs852799	0.90[JPT][hapmap]
rs852800	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv829937	chr1:58258288-58406506	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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