Variant report

Variant	rs852926
Chromosome Location	chr6:72181473-72181474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-6	chr6:72180870-72182983	NONHSAT113515
2	lnc-B3GAT2-6	chr6:72180870-72182983	ucscGeneNc_uc003pfz_1

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10155718	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1738070	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4141421	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs472572	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs472935	0.84[EUR][1000 genomes]
rs478959	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs493265	0.84[EUR][1000 genomes]
rs494938	0.84[EUR][1000 genomes]
rs495002	0.84[EUR][1000 genomes]
rs504139	0.83[EUR][1000 genomes]
rs537876	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs543625	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs558116	0.84[EUR][1000 genomes]
rs573317	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs701698	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs701699	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs852919	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs852920	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs852922	0.97[ASN][1000 genomes]
rs852923	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs852924	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852925	0.97[ASN][1000 genomes]
rs852927	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs852928	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs852961	0.97[ASN][1000 genomes]
rs852962	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs852971	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv1025409	chr6:72175998-72205044	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72178600-72187800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:72179200-72183400	Weak transcription	Adipose Nuclei	Adipose
3	chr6:72179400-72183400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:72179400-72183400	Weak transcription	Fetal Lung	lung
5	chr6:72179400-72186600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:72179400-72186800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:72179400-72191200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:72179600-72182800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:72179600-72183400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:72179600-72183800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:72179600-72183800	Weak transcription	Fetal Kidney	kidney
12	chr6:72179800-72183000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:72179800-72183400	Weak transcription	NHLF	lung
14	chr6:72179800-72185800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:72180000-72183000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:72180000-72183000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:72180000-72183200	Weak transcription	Osteobl	bone
18	chr6:72180000-72183400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:72180000-72183400	Weak transcription	NHDF-Ad	bronchial
20	chr6:72181200-72182200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:72181200-72183600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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