Variant report

Variant	rs852922
Chromosome Location	chr6:72183412-72183413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10155718	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1738072	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs492196	0.82[EUR][1000 genomes]
rs503993	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs504983	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs524110	0.82[EUR][1000 genomes]
rs547558	0.82[EUR][1000 genomes]
rs548456	0.82[EUR][1000 genomes]
rs555643	0.82[EUR][1000 genomes]
rs573317	0.82[ASN][1000 genomes]
rs580319	0.82[EUR][1000 genomes]
rs852919	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs852920	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs852923	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs852924	0.97[ASN][1000 genomes]
rs852925	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852926	0.97[ASN][1000 genomes]
rs852927	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs852929	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs852930	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs852931	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs852961	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852962	0.90[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs852963	0.82[JPT][hapmap]
rs852966	0.88[JPT][hapmap]
rs852971	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv1025409	chr6:72175998-72205044	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72178600-72187800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:72179400-72186600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:72179400-72186800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:72179400-72191200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:72179600-72183800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:72179600-72183800	Weak transcription	Fetal Kidney	kidney
7	chr6:72179800-72185800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:72181200-72183600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:72182800-72184000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:72183000-72184400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:72183000-72192600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:72183200-72184200	Enhancers	Osteobl	bone
13	chr6:72183400-72183800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:72183400-72183800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:72183400-72183800	Enhancers	Adipose Nuclei	Adipose
16	chr6:72183400-72184000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:72183400-72184000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:72183400-72184000	Enhancers	NHLF	lung
19	chr6:72183400-72184200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:72183400-72184200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:72183400-72184200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr6:72183400-72184200	Enhancers	HSMMtube	muscle
23	chr6:72183400-72184200	Enhancers	HUVEC	blood vessel
24	chr6:72183400-72184400	Enhancers	HMEC	breast
25	chr6:72183400-72184400	Enhancers	HSMM	muscle
26	chr6:72183400-72184400	Enhancers	NH-A	brain
27	chr6:72183400-72184800	Enhancers	NHDF-Ad	bronchial
28	chr6:72183400-72185600	Enhancers	Fetal Lung	lung

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